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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 15373 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OR569799.1 nt Cloning vector pEnEOimOrange2-msfGF... 5704 bp Cloning vector pEnEOimOrange2-msfGFP QL-ELE-00-007 180 bp View
OR569800.1 nt Cloning vector pEnEOimRuby3-msfGFP,... 5713 bp Cloning vector pEnEOimRuby3-msfGFP QL-ELE-00-007 180 bp View
OR569801.1 nt Cloning vector pEnEOimScarlet-msfGF... 5698 bp Cloning vector pEnEOimScarlet-msfGFP QL-ELE-00-007 180 bp View
OR569802.1 nt Cloning vector pEnEOimStrawberry-ms... 5704 bp Cloning vector pEnEOimStrawberry-msfGFP QL-ELE-00-007 180 bp View
OR569803.1 nt Cloning vector pEnEOistagRFP-msfGFP... 5734 bp Cloning vector pEnEOistagRFP-msfGFP QL-ELE-00-007 180 bp View
OR569804.1 nt Cloning vector pEnEOitagRFP-msfGFP,... 5734 bp Cloning vector pEnEOitagRFP-msfGFP QL-ELE-00-007 180 bp View
OR636129.1 nt Vector pEAQHT/35s:p19:xGluchy:mCher... 10698 bp Vector pEAQHT/35s:p19:xGluchy:mCherry:NosT QL-ELE-00-007 180 bp View
OR636129.1 nt Vector pEAQHT/35s:p19:xGluchy:mCher... 10698 bp Vector pEAQHT/35s:p19:xGluchy:mCherry:NosT QL-ELE-00-007 180 bp View
OR695065.1 nt Synthetic construct clone pLSU2/CoY... 8126 bp synthetic construct QL-ELE-00-007 180 bp View
OR695066.1 nt Synthetic construct clone pEAQHT/35... 7187 bp synthetic construct QL-ELE-00-007 180 bp View
OR695067.1 nt Synthetic construct clone pLSU2/CoY... 8099 bp synthetic construct QL-ELE-00-007 180 bp View
OR695068.1 nt Synthetic construct clone pLSU2/CoY... 8099 bp synthetic construct QL-ELE-00-007 180 bp View
OR695069.1 nt Synthetic construct clone pLSU2/CoY... 8120 bp synthetic construct QL-ELE-00-007 180 bp View
OR797710.1 nt Expression vector pBI221-H2B-mCherr... 5697 bp Expression vector pBI221-H2B-mCherry QL-ELE-00-007 180 bp View
OR797711.1 nt Binary vector pCAMBIA 1301-GFP-alph... 14209 bp Binary vector pCAMBIA 1301-GFP-alpha tubulin QL-ELE-00-007 180 bp View
OR797711.1 nt Binary vector pCAMBIA 1301-GFP-alph... 14209 bp Binary vector pCAMBIA 1301-GFP-alpha tubulin QL-ELE-00-007 180 bp View
OR797712.1 nt Binary vector pCAMBIA 1301-GFP-alph... 16020 bp Binary vector pCAMBIA 1301-GFP-alpha tubulin-mcherry QL-ELE-00-007 180 bp View
OR797712.1 nt Binary vector pCAMBIA 1301-GFP-alph... 16020 bp Binary vector pCAMBIA 1301-GFP-alpha tubulin-mcherry QL-ELE-00-007 180 bp View
OR797712.1 nt Binary vector pCAMBIA 1301-GFP-alph... 16020 bp Binary vector pCAMBIA 1301-GFP-alpha tubulin-mcherry QL-ELE-00-007 180 bp View
OR802131.1 nt Transformation vector PIG2.0, compl... 8597 bp Transformation vector PIG2.0 QL-ELE-00-007 180 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.