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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 15373 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP757697.1 nt Cloning vector TRV-RNA2-PDS1-s18a27... 11551 bp Cloning vector TRV-RNA2-PDS1-s18a27 QL-ELE-00-007 180 bp View
OP757698.1 nt Cloning vector TRV-RNA2-PDS4-m18a27... 11552 bp Cloning vector TRV-RNA2-PDS4-m18a27 QL-ELE-00-007 180 bp View
OP757699.1 nt Cloning vector TRV-RNA2-PDS1-a27, c... 11527 bp Cloning vector TRV-RNA2-PDS1-a27 QL-ELE-00-007 180 bp View
OP757700.1 nt Cloning vector TRV-RNA2-PDS4-a27, c... 11528 bp Cloning vector TRV-RNA2-PDS4-a27 QL-ELE-00-007 180 bp View
OP757701.1 nt Cloning vector TRV-RNA2-PDS4-m18, c... 11523 bp Cloning vector TRV-RNA2-PDS4-m18 QL-ELE-00-007 180 bp View
OP868846.1 nt Cloning vector IHP_0513_pBract202_p... 9799 bp Cloning vector IHP_0513_pBract202_pMla6_Spt1C_tMla6 QL-ELE-00-007 180 bp View
OQ418153.1 nt Synthetic construct clone pJF1271, ... 6152 bp synthetic construct QL-ELE-00-007 180 bp View
OQ601558.1 nt Vector pTLAB21_Bs314EBE_avrGf2, com... 14436 bp Vector pTLAB21_Bs314EBE_avrGf2 QL-ELE-00-007 180 bp View
OQ632785.1 nt Cloning vector 35S-GWY-GAL4BD/pAM, ... 7480 bp Cloning vector 35S-GWY-GAL4BD/pAM QL-ELE-00-007 180 bp View
OQ632786.1 nt Cloning vector 35S-GWY-VP16/pAM, co... 7321 bp Cloning vector 35S-GWY-VP16/pAM QL-ELE-00-007 180 bp View
OQ632787.1 nt Cloning vector 35S-GAL4BD-GWY/Pam, ... 7480 bp Cloning vector 35S-GAL4BD-GWY/Pam QL-ELE-00-007 180 bp View
OQ632788.1 nt Cloning vector 35S-VP16-GWY/pAM, co... 7327 bp Cloning vector 35S-VP16-GWY/pAM QL-ELE-00-007 180 bp View
OQ732917.1 nt Binary vector pGK21.0402, complete ... 17142 bp Binary vector pGK21.0402 QL-ELE-00-007 180 bp View
OQ732918.1 nt Binary vector pGK19.0923, complete ... 17064 bp Binary vector pGK19.0923 QL-ELE-00-007 180 bp View
OQ859100.1 nt Synthetic construct Mla7 native con... 15875 bp synthetic construct QL-ELE-00-007 180 bp View
OR392453.1 nt Vector pMON521-ToMoV{A}1.5mer, comp... 14747 bp Vector pMON521-ToMoV{A}1.5mer QL-ELE-00-007 180 bp View
OR392453.1 nt Vector pMON521-ToMoV{A}1.5mer, comp... 14747 bp Vector pMON521-ToMoV{A}1.5mer QL-ELE-00-007 180 bp View
OR392454.1 nt Vector pMON521-ToMoV{B}1.5mer, comp... 16123 bp Vector pMON521-ToMoV{B}1.5mer QL-ELE-00-007 180 bp View
OR392454.1 nt Vector pMON521-ToMoV{B}1.5mer, comp... 16123 bp Vector pMON521-ToMoV{B}1.5mer QL-ELE-00-007 180 bp View
OR569798.1 nt Cloning vector pEnEOiFusionRedMVQ-m... 5695 bp Cloning vector pEnEOiFusionRedMVQ-msfGFP QL-ELE-00-007 180 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.