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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 15373 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP013021.1 nt Synthetic construct clone pEnEOimsf... 6343 bp synthetic construct QL-ELE-00-007 180 bp View
OP013022.1 nt Synthetic construct clone pEnEOimsf... 6328 bp synthetic construct QL-ELE-00-007 180 bp View
OP013023.1 nt Synthetic construct clone pEnEOimsf... 6340 bp synthetic construct QL-ELE-00-007 180 bp View
OP013024.1 nt Synthetic construct clone pEnEOimsf... 6364 bp synthetic construct QL-ELE-00-007 180 bp View
OP013025.1 nt Synthetic construct clone pEnEOimsf... 6364 bp synthetic construct QL-ELE-00-007 180 bp View
OP093859.1 nt Synthetic construct MCAP PBV1, comp... 11376 bp synthetic construct QL-ELE-00-007 180 bp View
OP311716.1 nt Synthetic construct MCAP PBV2, comp... 11376 bp synthetic construct QL-ELE-00-007 180 bp View
OP311717.1 nt Synthetic construct MCAP PBV3, comp... 11376 bp synthetic construct QL-ELE-00-007 180 bp View
OP311718.1 nt Synthetic construct MCAP PBV4, comp... 11376 bp synthetic construct QL-ELE-00-007 180 bp View
OP311719.1 nt Synthetic construct MCAP PBV5, comp... 11376 bp synthetic construct QL-ELE-00-007 180 bp View
OP311720.1 nt Synthetic construct MCAP PBV6, comp... 11376 bp synthetic construct QL-ELE-00-007 180 bp View
OP672267.1 nt Vector pK2GW7-Ec86RT, complete sequ... 10644 bp Vector pK2GW7-Ec86RT QL-ELE-00-007 180 bp View
OP672268.1 nt Vector pK2-Cas9-XTEN-RT, complete s... 14802 bp Vector pK2-Cas9-XTEN-RT QL-ELE-00-007 180 bp View
OP672269.1 nt Vector pK2-Cas9-T2A-RT, complete se... 14808 bp Vector pK2-Cas9-T2A-RT QL-ELE-00-007 180 bp View
OP672270.1 nt Vector pK2-RT-XTEN-Cas9, complete s... 14802 bp Vector pK2-RT-XTEN-Cas9 QL-ELE-00-007 180 bp View
OP672271.1 nt Vector PK2-Cas9, complete sequence. 13797 bp Vector PK2-Cas9 QL-ELE-00-007 180 bp View
OP757693.1 nt Cloning vector pMDC43-VirE2, comple... 11668 bp Cloning vector pMDC43-VirE2 QL-ELE-00-007 180 bp View
OP757694.1 nt Cloning vector TRV2-RNA2-PDS4, comp... 11498 bp Cloning vector TRV2-RNA2-PDS4 QL-ELE-00-007 180 bp View
OP757695.1 nt Cloning vector TRV2-RNA2-PDS1, comp... 11498 bp Cloning vector TRV2-RNA2-PDS1 QL-ELE-00-007 180 bp View
OP757696.1 nt Cloning vector TRV2-RNA2-PDS1-m18, ... 11523 bp Cloning vector TRV2-RNA2-PDS1-m18 QL-ELE-00-007 180 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.