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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 15373 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OM938977.1 nt Oryza sativa Indica Group transgeni... 914 bp Oryza sativa Indica Group QL-ELE-00-007 180 bp View
OM938979.1 nt Oryza sativa Indica Group transgeni... 867 bp Oryza sativa Indica Group QL-ELE-00-007 180 bp View
OM981241.1 nt Oryza sativa Indica Group transgeni... 994 bp Oryza sativa Indica Group QL-ELE-00-007 180 bp View
ON018807.1 nt Oryza sativa Indica Group transgeni... 1168 bp Oryza sativa Indica Group QL-ELE-00-007 180 bp View
ON018818.1 nt Oryza sativa Indica Group transgeni... 770 bp Oryza sativa Indica Group QL-ELE-00-007 180 bp View
ON018819.1 nt Oryza sativa Indica Group clone CG2... 717 bp Oryza sativa Indica Group QL-ELE-00-007 180 bp View
ON018820.1 nt Oryza sativa Indica Group transgeni... 574 bp Oryza sativa Indica Group QL-ELE-00-007 180 bp View
ON018824.1 nt Oryza sativa Indica Group transgeni... 735 bp Oryza sativa Indica Group QL-ELE-00-007 181 bp View
ON087593.1 nt Oryza sativa Indica Group transgeni... 560 bp Oryza sativa Indica Group QL-ELE-00-007 180 bp View
ON092626.1 nt Moss mCitrine knock-in vector, comp... 6023 bp Moss mCitrine knock-in vector QL-ELE-00-007 180 bp View
ON092627.1 nt Moss mClover3 knock-in vector, comp... 6023 bp Moss mClover3 knock-in vector QL-ELE-00-007 180 bp View
ON773608.1 nt Binary vector pFGC-proCas9 UXS targ... 13732 bp Binary vector pFGC-proCas9 QL-ELE-00-007 180 bp View
ON773609.1 nt Binary vector pFGC-proCas9 StPL1 ta... 13733 bp Binary vector pFGC-proCas9 QL-ELE-00-007 180 bp View
ON773610.1 nt Binary vector pFGC-proCas9 GBSS tar... 13733 bp Binary vector pFGC-proCas9 QL-ELE-00-007 180 bp View
ON773611.1 nt Binary vector pFGC-proCas9 PPO targ... 13733 bp Binary vector pFGC-proCas9 QL-ELE-00-007 180 bp View
ON773612.1 nt Binary vector pFGC-proCas9 PMT targ... 13733 bp Binary vector pFGC-proCas9 QL-ELE-00-007 180 bp View
ON773613.1 nt Binary vector pFGC-proCas9 FATB tar... 13732 bp Binary vector pFGC-proCas9 QL-ELE-00-007 180 bp View
OP013018.1 nt Synthetic construct clone pEnEOimsf... 6328 bp synthetic construct QL-ELE-00-007 180 bp View
OP013019.1 nt Synthetic construct clone pEnEOimsf... 6340 bp synthetic construct QL-ELE-00-007 180 bp View
OP013020.1 nt Synthetic construct clone pEnEOimsf... 6340 bp synthetic construct QL-ELE-00-007 180 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.