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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 15373 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
A75888.1 emblrelpat Sequence 3 from Patent WO9321335. 5636 bp unidentified QL-ELE-00-007 180 bp View
A76915.1 emblrelpat Sequence 1 from Patent EP0757102. 4946 bp Transformation vector pTHW107 QL-ELE-00-007 180 bp View
A76916.1 emblrelpat Sequence 2 from Patent EP0757102. 6548 bp Plasmid PTS172 QL-ELE-00-007 180 bp View
A94795.1 emblrelpat Sequence 39 from Patent WO9932630. 1138 bp unidentified QL-ELE-00-007 180 bp View
AB003140.1 nt Arabidopsis thaliana transgenic lin... 2256 bp Arabidopsis thaliana QL-ELE-00-007 180 bp View
AB003140.1 emblreltgn Arabidopsis thaliana transgenic lin... 2256 bp Arabidopsis thaliana QL-ELE-00-007 180 bp View
AB003141.1 nt Arabidopsis thaliana transgenic lin... 4475 bp Arabidopsis thaliana QL-ELE-00-007 180 bp View
AB003141.1 emblreltgn Arabidopsis thaliana transgenic lin... 4475 bp Arabidopsis thaliana QL-ELE-00-007 180 bp View
AB003142.1 nt Arabidopsis thaliana transgenic lin... 5984 bp Arabidopsis thaliana QL-ELE-00-007 180 bp View
AB003142.1 emblreltgn Arabidopsis thaliana transgenic lin... 5984 bp Arabidopsis thaliana QL-ELE-00-007 180 bp View
AB016260.1 nt Agrobacterium tumefaciens plasmid p... 206479 bp Agrobacterium tumefaciens QL-ELE-00-007 180 bp View
AB020028.2 nt Cloning vector pYLTAC7 DNA, complet... 22530 bp Cloning vector pYLTAC7 QL-ELE-00-007 180 bp View
AB055064.1 nt Synthetic transposable element dAc-... 7635 bp synthetic construct QL-ELE-00-007 180 bp View
AB086433.1 nt Synthetic construct gene trap vecto... 10856 bp synthetic construct QL-ELE-00-007 180 bp View
AB086435.1 nt Synthetic construct gene trap vecto... 9863 bp synthetic construct QL-ELE-00-007 181 bp View
AB086436.1 nt Synthetic construct gene trap vecto... 10320 bp synthetic construct QL-ELE-00-007 181 bp View
AB201314.1 nt Cloning vector pSB4U DNA, complete ... 41385 bp Cloning vector pSB4U QL-ELE-00-007 180 bp View
AB209952.1 nt Glycine max transgenic cp4epsps gen... 2457 bp Glycine max QL-ELE-00-007 180 bp View
AB209952.1 emblreltgn Glycine max transgenic cp4epsps gen... 2457 bp Glycine max QL-ELE-00-007 180 bp View
AB267707.1 nt Moss transformation vector pTN85 DN... 4325 bp Moss transformation vector pTN85 QL-ELE-00-007 180 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.