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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 58553 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB364174.1 nt Gateway binary vector R4pGWB435 DNA... 12488 bp Gateway binary vector R4pGWB435 QL-ELE-00-003 173 bp View
AB364175.1 nt Gateway binary vector R4pGWB440 DNA... 11552 bp Gateway binary vector R4pGWB440 QL-ELE-00-003 173 bp View
AB364176.1 nt Gateway binary vector R4pGWB443 DNA... 11552 bp Gateway binary vector R4pGWB443 QL-ELE-00-003 173 bp View
AB364177.1 nt Gateway binary vector R4pGWB450 DNA... 11552 bp Gateway binary vector R4pGWB450 QL-ELE-00-003 173 bp View
AB364178.1 nt Gateway binary vector R4pGWB453 DNA... 11513 bp Gateway binary vector R4pGWB453 QL-ELE-00-003 173 bp View
AB366441.1 nt Salmonella enterica subsp. enterica... 61571 bp Salmonella enterica subsp. enterica serovar Dublin QL-ELE-00-003 173 bp View
AB427140.1 nt Exchangeable gene trap vector pU-21... 9333 bp Exchangeable gene trap vector pU-21W QL-ELE-00-003 173 bp View
AB434472.1 nt Synthetic construct aphA, pyrE, gfp... 4263 bp synthetic construct QL-ELE-00-003 173 bp View
AB434473.1 nt Synthetic construct aphA, cat, gfpu... 4109 bp synthetic construct QL-ELE-00-003 173 bp View
AB434474.1 nt Synthetic construct gfpuv5, aphA ge... 3068 bp synthetic construct QL-ELE-00-003 173 bp View
AB434475.1 nt Synthetic construct gfpuv5, aphA ge... 2773 bp synthetic construct QL-ELE-00-003 173 bp View
AB434476.1 nt Synthetic construct gfpuv5, aphA ge... 2030 bp synthetic construct QL-ELE-00-003 173 bp View
AB489142.1 nt Plant binary vector pIG121-Hm DNA, ... 17715 bp Plant binary vector pIG121-Hm QL-ELE-00-003 173 bp View
AB508948.1 nt Mammalian expression vector pC[Delt... 7703 bp Mammalian expression vector pC[Delta]E-chimUAAgaCAA21FLucH QL-ELE-00-003 173 bp View
AB508949.1 nt Mammalian expression vector pCInx-h... 8417 bp Mammalian expression vector pCInx-hRPSIVCAA21FLuc QL-ELE-00-003 173 bp View
AB512772.1 nt Gene silencing vector pSilent-Dual1... 5567 bp Gene silencing vector pSilent-Dual1 QL-ELE-00-003 173 bp View
AB524006.1 nt Gateway binary vector R4L1pGWB432 D... 13359 bp Gateway binary vector R4L1pGWB432 QL-ELE-00-003 173 bp View
AB524007.1 nt Gateway binary vector R4L1pGWB433 D... 12642 bp Gateway binary vector R4L1pGWB433 QL-ELE-00-003 173 bp View
AB524008.1 nt Gateway binary vector R4L1pGWB435 D... 12483 bp Gateway binary vector R4L1pGWB435 QL-ELE-00-003 173 bp View
AB524009.1 nt Gateway binary vector R4L1pGWB440 D... 11550 bp Gateway binary vector R4L1pGWB440 QL-ELE-00-003 173 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.