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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 58553 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB041928.1 nt Retroviral vector pCXneo DNA, compl... 6248 bp Retroviral vector pCXneo QL-ELE-00-003 173 bp View
AB086385.1 nt Retroviral vector pCX4neo DNA, comp... 6277 bp Retroviral vector pCX4neo QL-ELE-00-003 173 bp View
AB086433.1 nt Synthetic construct gene trap vecto... 10856 bp synthetic construct QL-ELE-00-003 173 bp View
AB086434.1 nt Synthetic construct gene trap vecto... 10212 bp synthetic construct QL-ELE-00-003 173 bp View
AB086435.1 nt Synthetic construct gene trap vecto... 9863 bp synthetic construct QL-ELE-00-003 173 bp View
AB086436.1 nt Synthetic construct gene trap vecto... 10320 bp synthetic construct QL-ELE-00-003 173 bp View
AB090853.1 nt Synthetic construct genes for zebra... 7869 bp synthetic construct QL-ELE-00-003 173 bp View
AB114136.1 nt Hepatitis C virus replicon pSGR-JFH... 8024 bp Hepatitis C virus replicon pSGR-JFH1 QL-ELE-00-003 173 bp View
AB119282.1 nt Hepatitis C virus gene for Fusion p... 9658 bp Hepacivirus hominis QL-ELE-00-003 173 bp View
AB127589.1 nt Cloning vector pHN267 KanR gene for... 1354 bp Cloning vector pHN267 QL-ELE-00-003 173 bp View
AB212854.1 nt Exchangeable gene trap vector pU-18... 9667 bp Exchangeable gene trap vector pU-18 QL-ELE-00-003 173 bp View
AB212855.1 nt Exchangeable gene trap vector pU-21... 9421 bp Exchangeable gene trap vector pU-21 QL-ELE-00-003 173 bp View
AB237837.1 nt Hepatitis C virus full-length repli... 11111 bp Hepatitis C virus full-length replicon pFGR-JFH1 QL-ELE-00-003 173 bp View
AB242435.1 nt Cloning vector pSINTK DNA, complete... 7208 bp Cloning vector pSINTK QL-ELE-00-003 173 bp View
AB242616.1 nt Exchangeable gene trap vector pU-Ha... 10032 bp Exchangeable gene trap vector pU-Hachi QL-ELE-00-003 173 bp View
AB255435.1 nt Escherichia coli plasmid pO86A1 DNA... 120730 bp Escherichia coli QL-ELE-00-003 173 bp View
AB255647.1 nt Exchangeable gene trap vector pU-21... 9399 bp Exchangeable gene trap vector pU-21B QL-ELE-00-003 173 bp View
AB255648.1 nt Exchangeable gene trap vector pU-21... 9357 bp Exchangeable gene trap vector pU-21T QL-ELE-00-003 173 bp View
AB267085.2 nt Shuttle vector pNV18 DNA, complete ... 4411 bp Shuttle vector pNV18 QL-ELE-00-003 173 bp View
AB267086.2 nt Shuttle vector pNV19 DNA, complete ... 4411 bp Shuttle vector pNV19 QL-ELE-00-003 173 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.