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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 58553 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
X98501.1 nt Cloning vector pKIL PCR-2 3315 bp synthetic construct QL-ELE-00-003 173 bp View
X98613.1 nt Artificial cloning vector LoristB 5551 bp unidentified cloning vector QL-ELE-00-003 173 bp View
X99274.1 nt Artificial sequence DNA for express... 7218 bp synthetic construct QL-ELE-00-003 173 bp View
X99439.1 nt Artificial cloning vector Lorist4 5407 bp synthetic construct QL-ELE-00-003 173 bp View
Y09894.1 nt Suicide plasmid vector pSG76-K DNA 1842 bp unidentified cloning vector QL-ELE-00-003 173 bp View
Y09897.1 nt Suicide plasmid vector pST76-K DNA 3356 bp unidentified cloning vector QL-ELE-00-003 173 bp View
Y10543.1 nt Cloning vector pKIL194 2770 bp Cloning vector pKIL194 QL-ELE-00-003 173 bp View
Y10544.1 nt Cloning vector pKIL194T 4498 bp Cloning vector pKIL194T QL-ELE-00-003 173 bp View
Y10545.1 nt Cloning vector pZeRO-2T 5025 bp Cloning vector pZeRO-2T QL-ELE-00-003 173 bp View
Y11035.1 nt Artificial DNA; bicistronic eukaryo... 5284 bp synthetic construct QL-ELE-00-003 173 bp View
Y18316.1 nt Cloning vector pKG1M 6074 bp Cloning vector pKG1M QL-ELE-00-003 173 bp View
Z12112.1 nt pWE15A cosmid vector DNA 8213 bp synthetic construct QL-ELE-00-003 173 bp View
Z93724.1 nt Murine retrovirus shuttle vector pZ... 7020 bp synthetic construct QL-ELE-00-003 173 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.