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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 58553 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
X01803.1 nt Transposable P vector conferring G4... 5073 bp Drosophila melanogaster QL-ELE-00-003 173 bp View
X53938.1 nt Plasmid vector pSU 36 2664 bp synthetic construct QL-ELE-00-003 173 bp View
X57709.1 nt E.coli Transposon Tn5 DNA for amino... 795 bp Escherichia coli QL-ELE-00-003 173 bp View
X64335.1 nt E.coli plasmid pMM234 DNA 9080 bp Escherichia coli QL-ELE-00-003 173 bp View
X65279.1 nt pWE15 cosmid vector DNA 8136 bp synthetic construct QL-ELE-00-003 173 bp View
X76682.1 nt Plasmid vector pHM3 betalactamase gene 6776 bp synthetic construct QL-ELE-00-003 173 bp View
X76683.1 nt Plasmid vector pHM2 betalactamase gene 8451 bp synthetic construct QL-ELE-00-003 173 bp View
X77672.1 nt Artificial DNA sequence for plant t... 3214 bp synthetic construct QL-ELE-00-003 173 bp View
X85118.1 nt Artificial sequences cloning vector... 6113 bp synthetic construct QL-ELE-00-003 173 bp View
X85119.1 nt Artificial sequences cloning vector... 6105 bp synthetic construct QL-ELE-00-003 173 bp View
X85120.1 nt Artificial sequences cloning vector... 6781 bp synthetic construct QL-ELE-00-003 173 bp View
X85121.1 nt Artificial sequences cloning vector... 6789 bp synthetic construct QL-ELE-00-003 173 bp View
X85122.1 nt Artificial sequences cloning vector... 6108 bp synthetic construct QL-ELE-00-003 173 bp View
X85123.1 nt Artificial sequences cloning vector... 6134 bp synthetic construct QL-ELE-00-003 173 bp View
X96610.1 nt Expression vector pCMVPA2 for prote... 6335 bp synthetic construct QL-ELE-00-003 173 bp View
X96611.1 nt Expression vector pCMVPA3 for prote... 6333 bp synthetic construct QL-ELE-00-003 173 bp View
X96612.1 nt Expression vector pCMVPA1 for prote... 6331 bp synthetic construct QL-ELE-00-003 173 bp View
X98409.1 nt Artificial cloning vector Lorist2 5620 bp synthetic construct QL-ELE-00-003 173 bp View
X98450.1 nt Artificial cloning vector Lorist6 5260 bp synthetic construct QL-ELE-00-003 173 bp View
X98500.1 nt Cloning vector pKIL PCR-1 3228 bp synthetic construct QL-ELE-00-003 173 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.