European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 58553 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
U55763.1 nt Cloning vector pEGFP-C1, complete s... 4731 bp Cloning vector pEGFP-C1 QL-ELE-00-003 173 bp View
U55819.2 nt Plasmid pRL765, complete sequence. 7631 bp Plasmid pRL765 QL-ELE-00-003 173 bp View
U57606.1 nt Cloning vector pEGFP-C2 with enhanc... 4735 bp Cloning vector pEGFP-C2 QL-ELE-00-003 173 bp View
U57607.1 nt Cloning vector pEGFP-C3 with enhanc... 4727 bp Cloning vector pEGFP-C3 QL-ELE-00-003 173 bp View
U57608.1 nt Cloning vector pEGFP-N2 with enhanc... 4737 bp Cloning vector pEGFP-N2 QL-ELE-00-003 173 bp View
U57609.1 nt Cloning vector pEGFP-N3 with enhanc... 4729 bp Cloning vector pEGFP-N3 QL-ELE-00-003 173 bp View
U63018.1 nt Cloning vector pRAY-1, complete seq... 5225 bp Cloning vector pRAY-1 QL-ELE-00-003 173 bp View
U63120.1 nt Cloning vector pRAY-2, complete seq... 4102 bp Cloning vector pRAY-2 QL-ELE-00-003 173 bp View
U64449.2 nt Cloning vector pOPRSVIMCS from Lacs... 5647 bp Cloning vector pOPRSVIMCS QL-ELE-00-003 173 bp View
U66312.1 nt Expression vector pZE2 PLtetO-1 MCS... 2217 bp Expression vector pZE2PLtetO-1 MCS2 QL-ELE-00-003 173 bp View
U66313.1 nt Expression vector pUHS*2Plac/ara-1 ... 4004 bp Expression vector pUHS*2Plac/ara-1 MCS1 QL-ELE-00-003 173 bp View
U66885.1 nt Cloning vector pAL-Z galactokinase ... 8561 bp Cloning vector pAL-Z QL-ELE-00-003 173 bp View
U87107.1 nt Cloning vector pAL-F insertion sequ... 8840 bp Cloning vector pAL-F QL-ELE-00-003 173 bp View
U89673.1 nt Cloning vector pIRES1neo, complete ... 5257 bp unidentified cloning vector QL-ELE-00-003 173 bp View
U89929.1 nt Cloning vector pTet-Off, complete s... 7391 bp unidentified cloning vector QL-ELE-00-003 173 bp View
U89930.1 nt Cloning vector pTet-On, complete se... 7391 bp unidentified cloning vector QL-ELE-00-003 173 bp View
U90436.1 nt Synthetic transposon Tn5lac, comple... 12366 bp synthetic construct QL-ELE-00-003 173 bp View
U90717.1 nt Transfection reporter vector pAV4p,... 6109 bp synthetic construct QL-ELE-00-003 173 bp View
U93512.1 nt Cloning vector CA1, complete sequence. 8756 bp synthetic construct QL-ELE-00-003 173 bp View
V00618.1 nt Transposon Tn5 fragment encoding ne... 1300 bp Escherichia coli QL-ELE-00-003 173 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.