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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 58553 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
U33186.1 nt Mycobacterium fortuitum/Escherichia... 5252 bp Cloning vector pSUM36 QL-ELE-00-003 173 bp View
U35127.1 nt Plasmid pBSL128 cloning vector, com... 5060 bp Cloning vector pBSL128 QL-ELE-00-003 173 bp View
U35136.1 nt Plasmid pBSL97 cloning vector, comp... 4289 bp Cloning vector pBSL97 QL-ELE-00-003 173 bp View
U35137.1 nt Plasmid pBSL99 cloning vector, comp... 4285 bp Cloning vector pBSL99 QL-ELE-00-003 173 bp View
U36201.1 nt Cloning vector pRSGFP-C1, with gree... 4728 bp Cloning vector pRSGFP-C1 QL-ELE-00-003 173 bp View
U36202.1 nt Cloning vector pS65T-C1, with green... 4728 bp Cloning vector pS65T-C1 QL-ELE-00-003 173 bp View
U37573.1 nt Phagemid vector pBK-CMV, complete s... 4518 bp Phagemid vector pBK-CMV QL-ELE-00-003 173 bp View
U42372.1 nt Cloning vector pOPRSVICat target ve... 6243 bp Cloning vector pOPRSVICat QL-ELE-00-003 173 bp View
U42373.1 nt Cloning vector pOPI3Cat target vect... 6289 bp Cloning vector pOPI3Cat QL-ELE-00-003 173 bp View
U43611.1 nt Cloning vector pMC1neo, complete se... 3804 bp Cloning vector pMC1neo QL-ELE-00-003 173 bp View
U43612.1 nt Cloning vector pMC1neo-polyA, compl... 3857 bp Cloning vector pMC1neo-polyA QL-ELE-00-003 173 bp View
U43958.1 nt Cloning vector pRcCMV-luc luciferas... 7290 bp Cloning vector pRcCMV-luc QL-ELE-00-003 173 bp View
U46492.1 nt Cloning vector pFRT2neo.lacZ beta-g... 7378 bp Cloning vector pFRT2neo.lacZ QL-ELE-00-003 173 bp View
U46780.1 nt Synthetic construct trap vector for... 8097 bp synthetic construct QL-ELE-00-003 173 bp View
U47120.2 nt Cloning vector pCI-neo, mammalian e... 5472 bp Cloning vector pCI-neo QL-ELE-00-003 173 bp View
U51558.1 nt Expression vector pEXT22, complete ... 6074 bp Expression vector pEXT22 QL-ELE-00-003 173 bp View
U52109.1 nt Cloning vector pLK-neo DNA. 7087 bp Cloning vector pLK-neo QL-ELE-00-003 173 bp View
U55385.2 nt Plasmid pRL1063a, complete sequence. 8939 bp Plasmid pRL1063a QL-ELE-00-003 173 bp View
U55761.1 nt Cloning vector pEGFP-1, complete se... 4151 bp Cloning vector pEGFP-1 QL-ELE-00-003 173 bp View
U55762.1 nt Cloning vector pEGFP-N1, complete s... 4733 bp Cloning vector pEGFP-N1 QL-ELE-00-003 173 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.