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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 58553 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
U10490.1 nt Binary cloning vector pPZP211 for p... 9014 bp Cloning vector pPZP211 QL-ELE-00-003 173 bp View
U12540.1 nt Plant transformation vector pBin19 ... 3212 bp Cloning vector pBin19 QL-ELE-00-003 173 bp View
U12638.1 nt Promoter-trapping vector pdeltagusB... 13911 bp Cloning vector pdeltagusBin19 QL-ELE-00-003 173 bp View
U12639.1 nt GUS gene fusion vector pBI101 T-DNA... 5349 bp Cloning vector pBI101 QL-ELE-00-003 173 bp View
U12640.1 nt GUS gene fusion vector pBI101.3 T-D... 5352 bp Cloning vector pBI101.3 QL-ELE-00-003 173 bp View
U12668.1 nt GUS gene fusion vector pBI101.2 T-D... 5351 bp Cloning vector pBI101.2 QL-ELE-00-003 173 bp View
U13189.1 nt Cloning vector pYACneo, complete se... 15827 bp Cloning vector pYACneo QL-ELE-00-003 173 bp View
U13761.1 nt Cloning vector pDO192, complete seq... 6735 bp Cloning vector pDO192 QL-ELE-00-003 173 bp View
U13762.1 nt Cloning vector pDO193, complete seq... 6765 bp Cloning vector pDO193 QL-ELE-00-003 173 bp View
U13862.1 nt pNEO cloning vector, complete sequence. 5508 bp unidentified cloning vector QL-ELE-00-003 173 bp View
U19276.1 nt Cloning vector pGFP-1 green fluores... 4146 bp Cloning vector pGFP-1 QL-ELE-00-003 173 bp View
U19277.1 nt Cloning vector pGFP-N3 green fluore... 4724 bp Cloning vector pGFP-N3 QL-ELE-00-003 173 bp View
U19278.1 nt Cloning vector pGFP-C3 green fluore... 4724 bp Cloning vector pGFP-C3 QL-ELE-00-003 173 bp View
U19279.1 nt Cloning vector pGFP-N1 green fluore... 4728 bp Cloning vector pGFP-N1 QL-ELE-00-003 173 bp View
U19280.1 nt Cloning vector pGFP-C1 green fluore... 4728 bp Cloning vector pGFP-C1 QL-ELE-00-003 173 bp View
U19281.1 nt Cloning vector pGFP-C2 green fluore... 4732 bp Cloning vector pGFP-C2 QL-ELE-00-003 173 bp View
U19282.1 nt Cloning vector pGFP-N2 green fluore... 4732 bp Cloning vector pGFP-N2 QL-ELE-00-003 173 bp View
U23751.1 nt Cloning vector pBBR1MCS-2 plasmid p... 5144 bp Cloning vector pBBR1MCS-2 QL-ELE-00-003 173 bp View
U25548.1 nt Synthetic transposon TnphoA, comple... 7733 bp synthetic construct QL-ELE-00-003 173 bp View
U32991.1 nt Escherichia coli mini-Tn5 kanamycin... 2356 bp Escherichia coli QL-ELE-00-003 173 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.