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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 58553 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
U00220.1 nt Synthetic construct HIV-1 consensus... 6506 bp synthetic construct QL-ELE-00-003 173 bp View
U00800.1 nt Cloning vector Pk184, complete sequ... 2432 bp Cloning vector Pk184 QL-ELE-00-003 173 bp View
U02430.1 nt Cloning vector pMAMneoBlue, complet... 8475 bp Cloning vector pMAMneoBlue QL-ELE-00-003 173 bp View
U02431.1 nt Cloning vector pMAMneo-CAT, complet... 9184 bp Cloning vector pMAMneo-CAT QL-ELE-00-003 173 bp View
U02432.1 nt Cloning vector pMAMneo, complete se... 8413 bp Cloning vector pMAMneo QL-ELE-00-003 173 bp View
U02434.1 nt Cloning vector pSV2neo, complete se... 5729 bp Cloning vector pSV2neo QL-ELE-00-003 173 bp View
U02448.1 nt Cloning vector pMAMneo-LUC, complet... 10339 bp Cloning vector pMAMneo-LUC QL-ELE-00-003 173 bp View
U03459.1 nt Cloning vector pDO17, complete sequ... 12035 bp Cloning vector pDO17 QL-ELE-00-003 173 bp View
U03460.1 nt Cloning vector pDO184, complete seq... 9820 bp Cloning vector pDO184 QL-ELE-00-003 173 bp View
U03461.1 nt Cloning vector pDO19, complete sequ... 11581 bp Cloning vector pDO19 QL-ELE-00-003 173 bp View
U03462.1 nt Cloning vector pDO2, complete sequence. 9386 bp Cloning vector pDO2 QL-ELE-00-003 173 bp View
U03463.1 nt Cloning vector pDO6, complete sequence. 8932 bp Cloning vector pDO6 QL-ELE-00-003 173 bp View
U04894.1 nt Cloning vector pKSM711, complete se... 3741 bp Cloning vector pKSM711 QL-ELE-00-003 173 bp View
U04895.1 nt Cloning vector pKSM713, complete se... 5041 bp Cloning vector pKSM713 QL-ELE-00-003 173 bp View
U04896.1 nt Cloning vector pKSM715, complete se... 5041 bp Cloning vector pKSM715 QL-ELE-00-003 173 bp View
U08460.1 nt Cloning vector pMAKK76 with kanamyc... 1814 bp Cloning vector pMAKK76 QL-ELE-00-003 173 bp View
U09365.1 nt Binary vector Bin19, complete sequence. 11777 bp Binary vector Bin19 QL-ELE-00-003 173 bp View
U10458.1 nt Binary cloning vector pPZP112 for p... 8909 bp Cloning vector pPZP112 QL-ELE-00-003 173 bp View
U10462.1 nt Binary cloning vector pPZP212 for p... 9014 bp Cloning vector pPZP212 QL-ELE-00-003 173 bp View
U10487.1 nt Binary cloning vector pPZP111 for p... 8909 bp Cloning vector pPZP111 QL-ELE-00-003 173 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.