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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 58553 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
PP125258.1 nt Vector pHK413, complete sequence. 5152 bp Vector pHK413 QL-ELE-00-003 173 bp View
PP125259.1 nt Vector pHK414, complete sequence. 5152 bp Vector pHK414 QL-ELE-00-003 173 bp View
PP125260.1 nt Vector pHK415, complete sequence. 5143 bp Vector pHK415 QL-ELE-00-003 173 bp View
PP125261.1 nt Vector pHK416, complete sequence. 6181 bp Vector pHK416 QL-ELE-00-003 173 bp View
PP125262.1 nt Vector pHK417, complete sequence. 5152 bp Vector pHK417 QL-ELE-00-003 173 bp View
PP125263.1 nt Vector pHK418, complete sequence. 5152 bp Vector pHK418 QL-ELE-00-003 173 bp View
PP125266.1 nt Vector pHK501, complete sequence. 4716 bp Vector pHK501 QL-ELE-00-003 173 bp View
PP125268.1 nt Vector pHK601, complete sequence. 7651 bp Vector pHK601 QL-ELE-00-003 173 bp View
PP125269.1 nt Vector pHK602, complete sequence. 4298 bp Vector pHK602 QL-ELE-00-003 173 bp View
PP125270.1 nt Vector pHK603, complete sequence. 5220 bp Vector pHK603 QL-ELE-00-003 173 bp View
PP125271.1 nt Vector pHK604, complete sequence. 9034 bp Vector pHK604 QL-ELE-00-003 173 bp View
PP125272.1 nt Vector pHK605, complete sequence. 5709 bp Vector pHK605 QL-ELE-00-003 173 bp View
PP125273.1 nt Vector pHK606, complete sequence. 6719 bp Vector pHK606 QL-ELE-00-003 173 bp View
PP125274.1 nt Vector pHK607, complete sequence. 6513 bp Vector pHK607 QL-ELE-00-003 173 bp View
PP171710.1 nt Synthetic construct clone CH1012_gp... 4404 bp synthetic construct QL-ELE-00-003 173 bp View
PP171711.1 nt Synthetic construct clone CH1012_gp... 4404 bp synthetic construct QL-ELE-00-003 173 bp View
PP171712.1 nt Synthetic construct clone CH1012_gp... 4404 bp synthetic construct QL-ELE-00-003 173 bp View
PP171713.1 nt Synthetic construct clone CH1012_gp... 4404 bp synthetic construct QL-ELE-00-003 173 bp View
PP171714.1 nt Synthetic construct clone CH1012_gp... 4404 bp synthetic construct QL-ELE-00-003 173 bp View
U00004.1 nt Escherichia coli transposon Tn5, co... 5818 bp Escherichia coli QL-ELE-00-003 173 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.