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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 58553 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
PP125230.1 nt Vector pHK219, complete sequence. 4706 bp Vector pHK219 QL-ELE-00-003 173 bp View
PP125231.1 nt Vector pHK220, complete sequence. 4681 bp Vector pHK220 QL-ELE-00-003 173 bp View
PP125232.1 nt Vector pHK221, complete sequence. 4692 bp Vector pHK221 QL-ELE-00-003 173 bp View
PP125233.1 nt Vector pHK222, complete sequence. 4726 bp Vector pHK222 QL-ELE-00-003 173 bp View
PP125234.1 nt Vector pHK223, complete sequence. 4705 bp Vector pHK223 QL-ELE-00-003 173 bp View
PP125235.1 nt Vector pHK224, complete sequence. 4714 bp Vector pHK224 QL-ELE-00-003 173 bp View
PP125236.1 nt Vector pHK225, complete sequence. 4767 bp Vector pHK225 QL-ELE-00-003 173 bp View
PP125237.1 nt Vector pHK226, complete sequence. 6110 bp Vector pHK226 QL-ELE-00-003 173 bp View
PP125246.1 nt Vector pHK401, complete sequence. 5111 bp Vector pHK401 QL-ELE-00-003 173 bp View
PP125247.1 nt Vector pHK402, complete sequence. 5111 bp Vector pHK402 QL-ELE-00-003 173 bp View
PP125248.1 nt Vector pHK403, complete sequence. 5129 bp Vector pHK403 QL-ELE-00-003 173 bp View
PP125249.1 nt Vector pHK404, complete sequence. 5130 bp Vector pHK404 QL-ELE-00-003 173 bp View
PP125250.1 nt Vector pHK405, complete sequence. 5130 bp Vector pHK405 QL-ELE-00-003 173 bp View
PP125251.1 nt Vector pHK406, complete sequence. 5139 bp Vector pHK406 QL-ELE-00-003 173 bp View
PP125252.1 nt Vector pHK407, complete sequence. 5139 bp Vector pHK407 QL-ELE-00-003 173 bp View
PP125253.1 nt Vector pHK408, complete sequence. 5146 bp Vector pHK408 QL-ELE-00-003 173 bp View
PP125254.1 nt Vector pHK409, complete sequence. 5146 bp Vector pHK409 QL-ELE-00-003 173 bp View
PP125255.1 nt Vector pHK410, complete sequence. 5144 bp Vector pHK410 QL-ELE-00-003 173 bp View
PP125256.1 nt Vector pHK411, complete sequence. 5152 bp Vector pHK411 QL-ELE-00-003 173 bp View
PP125257.1 nt Vector pHK412, complete sequence. 5152 bp Vector pHK412 QL-ELE-00-003 173 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.