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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 58553 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
PP098732.1 nt Cloning vector pKT25-HD-ART, comple... 4482 bp Cloning vector pKT25-HD-ART QL-ELE-00-003 173 bp View
PP125205.1 nt Vector pHK002, complete sequence. 3781 bp Vector pHK002 QL-ELE-00-003 173 bp View
PP125212.1 nt Vector pHK201, complete sequence. 4660 bp Vector pHK201 QL-ELE-00-003 173 bp View
PP125213.1 nt Vector pHK202, complete sequence. 4679 bp Vector pHK202 QL-ELE-00-003 173 bp View
PP125214.1 nt Vector pHK203, complete sequence. 4686 bp Vector pHK203 QL-ELE-00-003 173 bp View
PP125215.1 nt Vector pHK204, complete sequence. 4693 bp Vector pHK204 QL-ELE-00-003 173 bp View
PP125216.1 nt Vector pHK205, complete sequence. 4701 bp Vector pHK205 QL-ELE-00-003 173 bp View
PP125217.1 nt Vector pHK206, complete sequence. 4690 bp Vector pHK206 QL-ELE-00-003 173 bp View
PP125218.1 nt Vector pHK207, complete sequence. 4585 bp Vector pHK207 QL-ELE-00-003 173 bp View
PP125219.1 nt Vector pHK208, complete sequence. 4598 bp Vector pHK208 QL-ELE-00-003 173 bp View
PP125220.1 nt Vector pHK209, complete sequence. 4665 bp Vector pHK209 QL-ELE-00-003 173 bp View
PP125221.1 nt Vector pHK210, complete sequence. 4648 bp Vector pHK210 QL-ELE-00-003 173 bp View
PP125222.1 nt Vector pHK211, complete sequence. 4669 bp Vector pHK211 QL-ELE-00-003 173 bp View
PP125223.1 nt Vector pHK212, complete sequence. 4615 bp Vector pHK212 QL-ELE-00-003 173 bp View
PP125224.1 nt Vector pHK213, complete sequence. 4733 bp Vector pHK213 QL-ELE-00-003 173 bp View
PP125225.1 nt Vector pHK214, complete sequence. 4712 bp Vector pHK214 QL-ELE-00-003 173 bp View
PP125226.1 nt Vector pHK215, complete sequence. 4726 bp Vector pHK215 QL-ELE-00-003 173 bp View
PP125227.1 nt Vector pHK216, complete sequence. 4755 bp Vector pHK216 QL-ELE-00-003 173 bp View
PP125228.1 nt Vector pHK217, complete sequence. 4736 bp Vector pHK217 QL-ELE-00-003 173 bp View
PP125229.1 nt Vector pHK218, complete sequence. 4742 bp Vector pHK218 QL-ELE-00-003 173 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.