European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 58553 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
A63072.1 emblrelpat Sequence 16 from Patent WO9719180. 6555 bp unidentified QL-ELE-00-003 173 bp View
A78782.1 emblrelpat Sequence 3 from Patent EP0563714. 3740 bp Plasmid pREP4 QL-ELE-00-003 173 bp View
A80474.1 emblrelpat Sequence 1 from Patent WO9943795. 7699 bp unidentified QL-ELE-00-003 173 bp View
A80476.1 emblrelpat Sequence 3 from Patent WO9943795. 7311 bp unidentified QL-ELE-00-003 173 bp View
A80477.1 emblrelpat Sequence 4 from Patent WO9943795. 7885 bp unidentified QL-ELE-00-003 173 bp View
A91751.1 emblrelpat Sequence 7 from Patent WO9824810. 10070 bp unidentified QL-ELE-00-003 173 bp View
A91752.1 emblrelpat Sequence 8 from Patent WO9824810. 9697 bp unidentified QL-ELE-00-003 173 bp View
A91754.1 emblrelpat Sequence 10 from Patent WO9824810. 5082 bp unidentified QL-ELE-00-003 173 bp View
A92665.1 emblrelpat Sequence 1 from Patent WO9806437. 9600 bp unidentified QL-ELE-00-003 173 bp View
A92666.1 emblrelpat Sequence 2 from Patent WO9806437. 4328 bp unidentified QL-ELE-00-003 173 bp View
A92667.1 emblrelpat Sequence 3 from Patent WO9806437. 5107 bp unidentified QL-ELE-00-003 173 bp View
A92668.1 emblrelpat Sequence 4 from Patent WO9806437. 4818 bp unidentified QL-ELE-00-003 173 bp View
A94046.1 emblrelpat Sequence 27 from Patent EP0953639. 8068 bp unidentified QL-ELE-00-003 173 bp View
A94054.1 emblrelpat Sequence 35 from Patent EP0953639. 8068 bp unidentified QL-ELE-00-003 173 bp View
A95274.1 emblrelpat Sequence 5 from Patent WO9927132. 43228 bp unidentified QL-ELE-00-003 173 bp View
AB003468.1 nt Cloning vector pAP3neo DNA, complet... 5350 bp Cloning vector pAP3neo QL-ELE-00-003 173 bp View
AB005477.2 nt Cloning vector pMW218 DNA for repA ... 3923 bp Cloning vector pMW218 QL-ELE-00-003 173 bp View
AB005478.2 nt Cloning vector pMW219 DNA for repA ... 3923 bp Cloning vector pMW219 QL-ELE-00-003 173 bp View
AB028139.1 nt Dual-tagging gene trap vector pGT1 ... 11207 bp Dual-tagging gene trap vector pGT1 QL-ELE-00-003 173 bp View
AB038602.1 nt Cloning vector pLCPVRGNR104 DNA, co... 5590 bp Cloning vector pLCPVRGNR104 QL-ELE-00-003 173 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.