European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 58553 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB524010.1 nt Gateway binary vector R4L1pGWB443 D... 11550 bp Gateway binary vector R4L1pGWB443 QL-ELE-00-003 173 bp View
AB524011.1 nt Gateway binary vector R4L1pGWB450 D... 11547 bp Gateway binary vector R4L1pGWB450 QL-ELE-00-003 173 bp View
AB524012.1 nt Gateway binary vector R4L1pGWB459 D... 11544 bp Gateway binary vector R4L1pGWB459 QL-ELE-00-003 173 bp View
AB535096.1 nt Targeting vector pTgKCNQ2 DNA, comp... 14164 bp Targeting vector pTgKCNQ2 QL-ELE-00-003 173 bp View
AB538275.2 nt Moss transformation vector pTN83 ui... 4363 bp Moss transformation vector pTN83 QL-ELE-00-003 173 bp View
AB543173.1 nt Gateway binary vector pGWB459 DNA, ... 11558 bp Gateway binary vector pGWB459 QL-ELE-00-003 173 bp View
AB543174.1 nt Gateway binary vector pGWB460 DNA, ... 12399 bp Gateway binary vector pGWB460 QL-ELE-00-003 173 bp View
AB543175.1 nt Gateway binary vector pGWB461 DNA, ... 12398 bp Gateway binary vector pGWB461 QL-ELE-00-003 173 bp View
AB543179.1 nt Gateway binary vector R4pGWB459 DNA... 11549 bp Gateway binary vector R4pGWB459 QL-ELE-00-003 173 bp View
AB545979.1 nt Cloning vector pRTSK-sacB DNA, comp... 8466 bp Cloning vector pRTSK-sacB QL-ELE-00-003 173 bp View
AB553834.1 nt Human artificial chromosome vector ... 67507 bp Human artificial chromosome vector 21HAC4 QL-ELE-00-003 173 bp View
AB557594.1 nt Expression vector beta-act-loxP-RFP... 8897 bp Expression vector beta-act-loxP-RFP-loxP-GFP QL-ELE-00-003 173 bp View
AB570107.1 nt Transformation vector pHA-neo3 DNA,... 5418 bp Transformation vector pHA-neo3 QL-ELE-00-003 173 bp View
AB570111.1 nt Transformation vector pFZZ-neo3 DNA... 5865 bp Transformation vector pFZZ-neo3 QL-ELE-00-003 173 bp View
AB609713.1 nt Gene trap vector pCMT-SAhygpA-NP21 ... 10437 bp Gene trap vector pCMT-SAhygpA-NP21 QL-ELE-00-003 173 bp View
AB609714.1 nt Gene trap vector pCMT-SAhygpA-NP22 ... 10439 bp Gene trap vector pCMT-SAhygpA-NP22 QL-ELE-00-003 173 bp View
AB609715.1 nt Tol2 transposon-based gene trap vec... 8148 bp Tol2 transposon-based gene trap vector pT2F2-SAhygpA-NP21 QL-ELE-00-003 173 bp View
AB609716.1 nt Tol2 transposon-based gene trap vec... 8150 bp Tol2 transposon-based gene trap vector pT2F2-SAhygpA-NP22 QL-ELE-00-003 173 bp View
AB609717.1 nt Tol2 transposon-based gene trap vec... 8156 bp Tol2 transposon-based gene trap vector pT2F2-SAhygpA-NP21-Rev QL-ELE-00-003 173 bp View
AB673329.1 nt Gene-trapping retrovirus vector pUP... 10429 bp Gene-trapping retrovirus vector pUPATrap-CRV2 QL-ELE-00-003 173 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.