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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1572 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AM884377.1 nt Cloning vector pGKPGWC 7836 bp Cloning vector pGKPGWC QL-CON-00-014 140 bp View
AM884379.1 nt Cloning vector pGKPGWY 7836 bp Cloning vector pGKPGWY QL-CON-00-014 140 bp View
AM884380.1 nt Cloning vector pGKGWY 7293 bp Cloning vector pGKGWY QL-CON-00-014 140 bp View
AM884381.1 nt Cloning vector pGKGWG 7293 bp Cloning vector pGKGWG QL-CON-00-014 140 bp View
AM884382.1 nt Cloning vector pGKGWC 7293 bp Cloning vector pGKGWC QL-CON-00-014 140 bp View
AP018948.1 nt Gateway binary vector R4L1pGWB462 D... 11668 bp Gateway binary vector R4L1pGWB462 QL-CON-00-014 163 bp View
AP018949.1 nt Gateway binary vector R4L1pGWB465 D... 11593 bp Gateway binary vector R4L1pGWB465 QL-CON-00-014 163 bp View
AP018950.1 nt Gateway binary vector R4L1pGWB468 D... 11575 bp Gateway binary vector R4L1pGWB468 QL-CON-00-014 163 bp View
AP018951.1 nt Gateway binary vector R4L1pGWB471 D... 11737 bp Gateway binary vector R4L1pGWB471 QL-CON-00-014 163 bp View
AP018952.1 nt Gateway binary vector R4L1pGWB485 D... 11587 bp Gateway binary vector R4L1pGWB485 QL-CON-00-014 163 bp View
AP018953.1 nt Gateway binary vector R4L1pGWB488 D... 11569 bp Gateway binary vector R4L1pGWB488 QL-CON-00-014 163 bp View
AP018954.1 nt Gateway binary vector R4L1pGWB491 D... 11731 bp Gateway binary vector R4L1pGWB491 QL-CON-00-014 163 bp View
AP018976.1 nt Gateway binary vector pGWB462 DNA, ... 11666 bp Gateway binary vector pGWB462 QL-CON-00-014 163 bp View
AP018977.1 nt Gateway binary vector pGWB465 DNA, ... 11591 bp Gateway binary vector pGWB465 QL-CON-00-014 163 bp View
AP018978.1 nt Gateway binary vector pGWB468 DNA, ... 11573 bp Gateway binary vector pGWB468 QL-CON-00-014 163 bp View
AP018979.1 nt Gateway binary vector pGWB471 DNA, ... 11735 bp Gateway binary vector pGWB471 QL-CON-00-014 163 bp View
AP018980.1 nt Gateway binary vector pGWB485 DNA, ... 11585 bp Gateway binary vector pGWB485 QL-CON-00-014 163 bp View
AP018981.1 nt Gateway binary vector pGWB488 DNA, ... 11567 bp Gateway binary vector pGWB488 QL-CON-00-014 163 bp View
AP018982.1 nt Gateway binary vector pGWB491 DNA, ... 11729 bp Gateway binary vector pGWB491 QL-CON-00-014 163 bp View
AP019390.1 nt Gateway binary vector pB4nVGW3 DNA,... 12317 bp Gateway binary vector pB4nVGW3 QL-CON-00-014 163 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.