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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1572 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OR842980.1 nt Expression vector mTALEADATP622, co... 17137 bp Expression vector mTALEADATP622 QL-CON-00-014 140 bp View
OR842981.1 nt Expression vector mTALEADnad71, com... 17137 bp Expression vector mTALEADnad71 QL-CON-00-014 140 bp View
OR842982.1 nt Expression vector mTALEADnad72, com... 16831 bp Expression vector mTALEADnad72 QL-CON-00-014 140 bp View
PA263415.1 emblrelpat JP 2021078362-A/4: Method for intro... 11588 bp synthetic construct QL-CON-00-014 141 bp View
PA264904.1 emblrelpat WO 2021095802-A/4: Method for intro... 11588 bp synthetic construct QL-CON-00-014 141 bp View
U09365.1 nt Binary vector Bin19, complete sequence. 11777 bp Binary vector Bin19 QL-CON-00-014 163 bp View
U12540.1 nt Plant transformation vector pBin19 ... 3212 bp Cloning vector pBin19 QL-CON-00-014 163 bp View
U12638.1 nt Promoter-trapping vector pdeltagusB... 13911 bp Cloning vector pdeltagusBin19 QL-CON-00-014 163 bp View
U12639.1 nt GUS gene fusion vector pBI101 T-DNA... 5349 bp Cloning vector pBI101 QL-CON-00-014 163 bp View
U12640.1 nt GUS gene fusion vector pBI101.3 T-D... 5352 bp Cloning vector pBI101.3 QL-CON-00-014 163 bp View
U12668.1 nt GUS gene fusion vector pBI101.2 T-D... 5351 bp Cloning vector pBI101.2 QL-CON-00-014 163 bp View
X77672.1 nt Artificial DNA sequence for plant t... 3214 bp synthetic construct QL-CON-00-014 163 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.