European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1572 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
NRN_GY060018 nrnl1 Sequence 43 from patent US 7906325. 21178 bp unidentified QL-CON-00-014 170 bp View
NRN_GY060019 nrnl1 Sequence 44 from patent US 7906325. 22635 bp unidentified QL-CON-00-014 170 bp View
NRN_GY243939 nrnl1 Sequence 2 from patent US 7947871. 13818 bp unidentified QL-CON-00-014 163 bp View
NRN_GZ450610 nrnl1 Sequence 33 from patent US 8232381.... 5449 bp unidentified QL-CON-00-014 163 bp View
NRN_GZ450611 nrnl1 Sequence 34 from patent US 8232381.... 4666 bp unidentified QL-CON-00-014 163 bp View
NRN_HA641803 nrnl1 Sequence 17 from Patent WO2009056155. 12435 bp unidentified QL-CON-00-014 170 bp View
NRN_HA641817 nrnl1 Sequence 31 from Patent WO2009056155. 12667 bp unidentified QL-CON-00-014 170 bp View
NRN_HC668157 nrnl1 Sequence 5 from Patent WO2010036135. 9156 bp unidentified QL-CON-00-014 163 bp View
NRN_HH931606 nrnl1 Sequence 96 from Patent EP2235185. ... 11135 bp unidentified QL-CON-00-014 140 bp View
NRN_HI284312 nrnl1 Sequence 169 from Patent EP2046111. 4856 bp unidentified QL-CON-00-014 163 bp View
NRN_HI654103 nrnl1 Sequence 10 from Patent EP2208788. 6714 bp unidentified QL-CON-00-014 163 bp View
NRN_JA170206 nrnl1 Sequence 61 from Patent WO2011023539. 12197 bp unidentified QL-CON-00-014 163 bp View
NRN_JA172254 nrnl1 Sequence 61 from Patent WO2011023537. 12176 bp unidentified QL-CON-00-014 163 bp View
NRN_JA515157 nrnl1 Sequence 31 from Patent WO2011112945. 16821 bp unidentified QL-CON-00-014 165 bp View
NRN_JA515160 nrnl1 Sequence 34 from Patent WO2011112945. 18235 bp unidentified QL-CON-00-014 165 bp View
NRN_JA515161 nrnl1 Sequence 35 from Patent WO2011112945. 18649 bp unidentified QL-CON-00-014 165 bp View
NRN_JA640277 nrnl1 Sequence 23 from Patent WO2011136651. 13647 bp unidentified QL-CON-00-014 149 bp View
NRN_JA659783 nrnl1 Sequence 1 from Patent EP2385130. ... 13583 bp unidentified QL-CON-00-014 163 bp View
OP093859.1 nt Synthetic construct MCAP PBV1, comp... 11376 bp synthetic construct QL-CON-00-014 163 bp View
OP311716.1 nt Synthetic construct MCAP PBV2, comp... 11376 bp synthetic construct QL-CON-00-014 163 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.