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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1572 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
NRN_CQ887767 nrnl1 Sequence 48 from Patent WO200406335... 17118 bp unidentified QL-CON-00-014 163 bp View
NRN_CQ887769 nrnl1 Sequence 50 from Patent WO200406335... 18617 bp unidentified QL-CON-00-014 163 bp View
NRN_CQ887770 nrnl1 Sequence 51 from Patent WO200406335... 18333 bp unidentified QL-CON-00-014 163 bp View
NRN_CQ887781 nrnl1 Sequence 62 from Patent WO200406335... 16103 bp unidentified QL-CON-00-014 163 bp View
NRN_CQ887982 nrnl1 Sequence 60 from Patent WO2004085644. 1502 bp unidentified QL-CON-00-014 163 bp View
NRN_CQ894201 nrnl1 Sequence 1 from Patent WO2004090160... 1600 bp unidentified QL-CON-00-014 163 bp View
NRN_CS104337 nrnl1 Sequence 5 from Patent WO2005049842... 3262 bp unidentified QL-CON-00-014 152 bp View
NRN_CS104338 nrnl1 Sequence 6 from Patent WO2005049842... 5345 bp unidentified QL-CON-00-014 152 bp View
NRN_CS105059 nrnl1 Sequence 8 from Patent WO2005049839... 9573 bp unidentified QL-CON-00-014 163 bp View
NRN_CS159296 nrnl1 Sequence 3 from Patent WO2005080579. 15126 bp unidentified QL-CON-00-014 163 bp View
NRN_CS159297 nrnl1 Sequence 4 from Patent WO2005080579. 12489 bp unidentified QL-CON-00-014 163 bp View
NRN_CS182458 nrnl1 Sequence 2 from Patent WO2005097999. 10870 bp unidentified QL-CON-00-014 152 bp View
NRN_CS204341 nrnl1 Sequence 49 from Patent WO2005108568. 9227 bp unidentified QL-CON-00-014 163 bp View
NRN_CS204342 nrnl1 Sequence 50 from Patent WO2005108568. 9227 bp unidentified QL-CON-00-014 163 bp View
NRN_CS204343 nrnl1 Sequence 51 from Patent WO2005108568. 15506 bp unidentified QL-CON-00-014 163 bp View
NRN_CS283703 nrnl1 Sequence 156 from Patent EP1645633.... 8986 bp unidentified QL-CON-00-014 163 bp View
NRN_CS376391 nrnl1 Sequence 5 from Patent WO2006074956. 6082 bp unidentified QL-CON-00-014 152 bp View
NRN_CS376392 nrnl1 Sequence 6 from Patent WO2006074956. 6085 bp unidentified QL-CON-00-014 152 bp View
NRN_CS376393 nrnl1 Sequence 7 from Patent WO2006074956. 6102 bp unidentified QL-CON-00-014 152 bp View
NRN_CS380607 nrnl1 Sequence 7 from Patent WO2006082237. 15243 bp unidentified QL-CON-00-014 163 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.