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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1572 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
NRN_CQ792402 nrnl1 Sequence 147 from Patent WO20040206... 5668 bp unidentified QL-CON-00-014 163 bp View
NRN_CQ792403 nrnl1 Sequence 148 from Patent WO20040206... 5074 bp unidentified QL-CON-00-014 163 bp View
NRN_CQ792428 nrnl1 Sequence 173 from Patent WO20040206... 5727 bp unidentified QL-CON-00-014 163 bp View
NRN_CQ871363 nrnl1 Sequence 15 from Patent WO200407898... 15294 bp unidentified QL-CON-00-014 165 bp View
NRN_CQ874879 nrnl1 Sequence 34 from Patent WO200407661... 17061 bp unidentified QL-CON-00-014 165 bp View
NRN_CQ876988 nrnl1 Sequence 34 from Patent WO200408121... 12633 bp unidentified QL-CON-00-014 163 bp View
NRN_CQ876990 nrnl1 Sequence 36 from Patent WO200408121... 12776 bp unidentified QL-CON-00-014 163 bp View
NRN_CQ887722 nrnl1 Sequence 3 from Patent WO2004063358... 15739 bp unidentified QL-CON-00-014 163 bp View
NRN_CQ887755 nrnl1 Sequence 36 from Patent WO200406335... 16245 bp unidentified QL-CON-00-014 163 bp View
NRN_CQ887756 nrnl1 Sequence 37 from Patent WO200406335... 17877 bp unidentified QL-CON-00-014 163 bp View
NRN_CQ887757 nrnl1 Sequence 38 from Patent WO200406335... 17238 bp unidentified QL-CON-00-014 163 bp View
NRN_CQ887758 nrnl1 Sequence 39 from Patent WO200406335... 17238 bp unidentified QL-CON-00-014 163 bp View
NRN_CQ887759 nrnl1 Sequence 40 from Patent WO200406335... 18449 bp unidentified QL-CON-00-014 163 bp View
NRN_CQ887760 nrnl1 Sequence 41 from Patent WO200406335... 18449 bp unidentified QL-CON-00-014 163 bp View
NRN_CQ887761 nrnl1 Sequence 42 from Patent WO200406335... 17593 bp unidentified QL-CON-00-014 163 bp View
NRN_CQ887762 nrnl1 Sequence 43 from Patent WO200406335... 16954 bp unidentified QL-CON-00-014 163 bp View
NRN_CQ887763 nrnl1 Sequence 44 from Patent WO200406335... 16954 bp unidentified QL-CON-00-014 163 bp View
NRN_CQ887764 nrnl1 Sequence 45 from Patent WO200406335... 19491 bp unidentified QL-CON-00-014 163 bp View
NRN_CQ887765 nrnl1 Sequence 46 from Patent WO200406335... 21300 bp unidentified QL-CON-00-014 163 bp View
NRN_CQ887766 nrnl1 Sequence 47 from Patent WO200406335... 17756 bp unidentified QL-CON-00-014 163 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.