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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1572 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB830549.1 nt Gateway vector pB4nCGW DNA, complet... 12228 bp Gateway vector pB4nCGW QL-CON-00-014 163 bp View
AB830550.1 nt Gateway vector pB4nGGW DNA, complet... 12228 bp Gateway vector pB4nGGW QL-CON-00-014 163 bp View
AB830551.1 nt Gateway vector pB4nRGW DNA, complet... 12201 bp Gateway vector pB4nRGW QL-CON-00-014 163 bp View
AB830552.1 nt Gateway vector pB4nYGW DNA, complet... 12228 bp Gateway vector pB4nYGW QL-CON-00-014 163 bp View
AB830553.1 nt Gateway vector pB4GWcCG DNA, comple... 11889 bp Gateway vector pB4GWcCG QL-CON-00-014 163 bp View
AB830554.1 nt Gateway vector pB4GWcR DNA, complet... 11931 bp Gateway vector pB4GWcR QL-CON-00-014 163 bp View
AB830555.1 nt Gateway vector pB4GWcY DNA, complet... 11889 bp Gateway vector pB4GWcY QL-CON-00-014 163 bp View
AB830556.1 nt Gateway vector pB4GWnC DNA, complet... 12213 bp Gateway vector pB4GWnC QL-CON-00-014 163 bp View
AB830557.1 nt Gateway vector pB4GWnG DNA, complet... 12213 bp Gateway vector pB4GWnG QL-CON-00-014 163 bp View
AB830558.1 nt Gateway vector pB4GWnR DNA, complet... 12186 bp Gateway vector pB4GWnR QL-CON-00-014 163 bp View
AB830559.1 nt Gateway vector pB4GWnY DNA, complet... 12213 bp Gateway vector pB4GWnY QL-CON-00-014 163 bp View
AB889496.1 nt Activation tagging vector pKANAC2K ... 6790 bp Activation tagging vector pKANAC2K QL-CON-00-014 163 bp View
AF330636.1 nt Plant DNA excision vector pX6-GFP, ... 14103 bp Plant DNA excision vector pX6-GFP QL-CON-00-014 163 bp View
AF485783.1 nt Binary vector pBI121, complete sequ... 14758 bp Binary vector pBI121 QL-CON-00-014 163 bp View
AF489904.1 nt Cloning vector pHellsgate 8, comple... 17485 bp Cloning vector pHellsgate 8 QL-CON-00-014 170 bp View
AJ311874.1 nt Cloning vector pHELLSGATE 18691 bp Cloning vector pHELLSGATE QL-CON-00-014 170 bp View
AJ414108.1 nt Binary vector pGV4042 DNA, region b... 3669 bp Binary vector pGV4042 QL-CON-00-014 151 bp View
AJ414109.1 nt Binary vector pGV4126 DNA, region b... 5341 bp Binary vector pGV4126 QL-CON-00-014 151 bp View
AJ414110.1 nt Binary vector pGV4128 DNA, region b... 5439 bp Binary vector pGV4128 QL-CON-00-014 151 bp View
AJ414111.1 nt Binary vector pGV4223 DNA, region b... 5582 bp Binary vector pGV4223 QL-CON-00-014 151 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.