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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1572 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB364176.1 nt Gateway binary vector R4pGWB443 DNA... 11552 bp Gateway binary vector R4pGWB443 QL-CON-00-014 163 bp View
AB364177.1 nt Gateway binary vector R4pGWB450 DNA... 11552 bp Gateway binary vector R4pGWB450 QL-CON-00-014 163 bp View
AB364178.1 nt Gateway binary vector R4pGWB453 DNA... 11513 bp Gateway binary vector R4pGWB453 QL-CON-00-014 163 bp View
AB489142.1 nt Plant binary vector pIG121-Hm DNA, ... 17715 bp Plant binary vector pIG121-Hm QL-CON-00-014 163 bp View
AB524006.1 nt Gateway binary vector R4L1pGWB432 D... 13359 bp Gateway binary vector R4L1pGWB432 QL-CON-00-014 163 bp View
AB524007.1 nt Gateway binary vector R4L1pGWB433 D... 12642 bp Gateway binary vector R4L1pGWB433 QL-CON-00-014 163 bp View
AB524008.1 nt Gateway binary vector R4L1pGWB435 D... 12483 bp Gateway binary vector R4L1pGWB435 QL-CON-00-014 163 bp View
AB524009.1 nt Gateway binary vector R4L1pGWB440 D... 11550 bp Gateway binary vector R4L1pGWB440 QL-CON-00-014 163 bp View
AB524010.1 nt Gateway binary vector R4L1pGWB443 D... 11550 bp Gateway binary vector R4L1pGWB443 QL-CON-00-014 163 bp View
AB524011.1 nt Gateway binary vector R4L1pGWB450 D... 11547 bp Gateway binary vector R4L1pGWB450 QL-CON-00-014 163 bp View
AB524012.1 nt Gateway binary vector R4L1pGWB459 D... 11544 bp Gateway binary vector R4L1pGWB459 QL-CON-00-014 163 bp View
AB543173.1 nt Gateway binary vector pGWB459 DNA, ... 11558 bp Gateway binary vector pGWB459 QL-CON-00-014 163 bp View
AB543174.1 nt Gateway binary vector pGWB460 DNA, ... 12399 bp Gateway binary vector pGWB460 QL-CON-00-014 163 bp View
AB543175.1 nt Gateway binary vector pGWB461 DNA, ... 12398 bp Gateway binary vector pGWB461 QL-CON-00-014 163 bp View
AB543179.1 nt Gateway binary vector R4pGWB459 DNA... 11549 bp Gateway binary vector R4pGWB459 QL-CON-00-014 163 bp View
AB752375.1 nt Gateway binary vector pGWB480omega ... 12333 bp Gateway binary vector pGWB480omega QL-CON-00-014 163 bp View
AB752377.1 nt Gateway binary vector pGWB80 DNA, c... 17897 bp Gateway binary vector pGWB80 QL-CON-00-014 163 bp View
AB830546.1 nt Gateway vector pB4cCGGW DNA, comple... 11904 bp Gateway vector pB4cCGGW QL-CON-00-014 163 bp View
AB830547.1 nt Gateway vector pB4cRGW DNA, complet... 11948 bp Gateway vector pB4cRGW QL-CON-00-014 163 bp View
AB830548.1 nt Gateway vector pB4cYGW DNA, complet... 11904 bp Gateway vector pB4cYGW QL-CON-00-014 163 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.