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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1572 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB294461.1 nt Gateway binary vector pGWB445 DNA, ... 12404 bp Gateway binary vector pGWB445 QL-CON-00-014 163 bp View
AB294462.1 nt Gateway binary vector pGWB450 DNA, ... 11561 bp Gateway binary vector pGWB450 QL-CON-00-014 163 bp View
AB294463.1 nt Gateway binary vector pGWB451 DNA, ... 12402 bp Gateway binary vector pGWB451 QL-CON-00-014 163 bp View
AB294464.1 nt Gateway binary vector pGWB452 DNA, ... 12401 bp Gateway binary vector pGWB452 QL-CON-00-014 163 bp View
AB294465.1 nt Gateway binary vector pGWB453 DNA, ... 11522 bp Gateway binary vector pGWB453 QL-CON-00-014 163 bp View
AB294466.1 nt Gateway binary vector pGWB454 DNA, ... 12363 bp Gateway binary vector pGWB454 QL-CON-00-014 163 bp View
AB294467.1 nt Gateway binary vector pGWB455 DNA, ... 12362 bp Gateway binary vector pGWB455 QL-CON-00-014 163 bp View
AB364163.1 nt Gateway binary vector R4pGWB401 DNA... 10835 bp Gateway binary vector R4pGWB401 QL-CON-00-014 163 bp View
AB364164.1 nt Gateway binary vector R4pGWB404 DNA... 11564 bp Gateway binary vector R4pGWB404 QL-CON-00-014 163 bp View
AB364165.1 nt Gateway binary vector R4pGWB407 DNA... 10853 bp Gateway binary vector R4pGWB407 QL-CON-00-014 163 bp View
AB364166.1 nt Gateway binary vector R4pGWB410 DNA... 10859 bp Gateway binary vector R4pGWB410 QL-CON-00-014 163 bp View
AB364167.1 nt Gateway binary vector R4pGWB413 DNA... 10955 bp Gateway binary vector R4pGWB413 QL-CON-00-014 163 bp View
AB364168.1 nt Gateway binary vector R4pGWB416 DNA... 11006 bp Gateway binary vector R4pGWB416 QL-CON-00-014 163 bp View
AB364169.1 nt Gateway binary vector R4pGWB419 DNA... 11237 bp Gateway binary vector R4pGWB419 QL-CON-00-014 163 bp View
AB364170.1 nt Gateway binary vector R4pGWB422 DNA... 11513 bp Gateway binary vector R4pGWB422 QL-CON-00-014 163 bp View
AB364171.1 nt Gateway binary vector R4pGWB425 DNA... 10868 bp Gateway binary vector R4pGWB425 QL-CON-00-014 163 bp View
AB364172.1 nt Gateway binary vector R4pGWB428 DNA... 11381 bp Gateway binary vector R4pGWB428 QL-CON-00-014 163 bp View
AB364173.1 nt Gateway binary vector R4pGWB433 DNA... 12647 bp Gateway binary vector R4pGWB433 QL-CON-00-014 163 bp View
AB364174.1 nt Gateway binary vector R4pGWB435 DNA... 12488 bp Gateway binary vector R4pGWB435 QL-CON-00-014 163 bp View
AB364175.1 nt Gateway binary vector R4pGWB440 DNA... 11552 bp Gateway binary vector R4pGWB440 QL-CON-00-014 163 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.