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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1572 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB294441.1 nt Gateway binary vector pGWB417 DNA, ... 11856 bp Gateway binary vector pGWB417 QL-CON-00-014 163 bp View
AB294442.1 nt Gateway binary vector pGWB418 DNA, ... 11858 bp Gateway binary vector pGWB418 QL-CON-00-014 163 bp View
AB294443.1 nt Gateway binary vector pGWB419 DNA, ... 11231 bp Gateway binary vector pGWB419 QL-CON-00-014 163 bp View
AB294444.1 nt Gateway binary vector pGWB420 DNA, ... 12087 bp Gateway binary vector pGWB420 QL-CON-00-014 163 bp View
AB294445.1 nt Gateway binary vector pGWB421 DNA, ... 12092 bp Gateway binary vector pGWB421 QL-CON-00-014 163 bp View
AB294446.1 nt Gateway binary vector pGWB422 DNA, ... 11507 bp Gateway binary vector pGWB422 QL-CON-00-014 163 bp View
AB294447.1 nt Gateway binary vector pGWB423 DNA, ... 12363 bp Gateway binary vector pGWB423 QL-CON-00-014 163 bp View
AB294448.1 nt Gateway binary vector pGWB424 DNA, ... 12365 bp Gateway binary vector pGWB424 QL-CON-00-014 163 bp View
AB294449.1 nt Gateway binary vector pGWB425 DNA, ... 10862 bp Gateway binary vector pGWB425 QL-CON-00-014 163 bp View
AB294450.1 nt Gateway binary vector pGWB426 DNA, ... 11718 bp Gateway binary vector pGWB426 QL-CON-00-014 163 bp View
AB294451.1 nt Gateway binary vector pGWB427 DNA, ... 11720 bp Gateway binary vector pGWB427 QL-CON-00-014 163 bp View
AB294452.1 nt Gateway binary vector pGWB428 DNA, ... 11375 bp Gateway binary vector pGWB428 QL-CON-00-014 163 bp View
AB294453.1 nt Gateway binary vector pGWB429 DNA, ... 12231 bp Gateway binary vector pGWB429 QL-CON-00-014 163 bp View
AB294454.1 nt Gateway binary vector pGWB433 DNA, ... 12656 bp Gateway binary vector pGWB433 QL-CON-00-014 163 bp View
AB294455.1 nt Gateway binary vector pGWB435 DNA, ... 12497 bp Gateway binary vector pGWB435 QL-CON-00-014 163 bp View
AB294456.1 nt Gateway binary vector pGWB440 DNA, ... 11561 bp Gateway binary vector pGWB440 QL-CON-00-014 163 bp View
AB294457.1 nt Gateway binary vector pGWB441 DNA, ... 12402 bp Gateway binary vector pGWB441 QL-CON-00-014 163 bp View
AB294458.1 nt Gateway binary vector pGWB442 DNA, ... 12404 bp Gateway binary vector pGWB442 QL-CON-00-014 163 bp View
AB294459.1 nt Gateway binary vector pGWB443 DNA, ... 11561 bp Gateway binary vector pGWB443 QL-CON-00-014 163 bp View
AB294460.1 nt Gateway binary vector pGWB444 DNA, ... 12402 bp Gateway binary vector pGWB444 QL-CON-00-014 163 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.