European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1572 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB289800.1 nt Gateway binary vector pGWB203 DNA, ... 17732 bp Gateway binary vector pGWB203 QL-CON-00-014 163 bp View
AB289801.1 nt Gateway binary vector pGWB204 DNA, ... 16559 bp Gateway binary vector pGWB204 QL-CON-00-014 163 bp View
AB289802.1 nt Gateway binary vector pGWB228 DNA, ... 16383 bp Gateway binary vector pGWB228 QL-CON-00-014 163 bp View
AB289803.1 nt Gateway binary vector pGWB235 DNA, ... 17490 bp Gateway binary vector pGWB235 QL-CON-00-014 163 bp View
AB294425.1 nt Gateway binary vector pGWB401 DNA, ... 10844 bp Gateway binary vector pGWB401 QL-CON-00-014 163 bp View
AB294426.1 nt Gateway binary vector pGWB402 DNA, ... 11685 bp Gateway binary vector pGWB402 QL-CON-00-014 163 bp View
AB294427.1 nt Gateway binary vector pGWB402omega ... 11678 bp Gateway binary vector pGWB402omega QL-CON-00-014 163 bp View
AB294428.1 nt Gateway binary vector pGWB404 DNA, ... 11551 bp Gateway binary vector pGWB404 QL-CON-00-014 163 bp View
AB294429.1 nt Gateway binary vector pGWB405 DNA, ... 12414 bp Gateway binary vector pGWB405 QL-CON-00-014 163 bp View
AB294430.1 nt Gateway binary vector pGWB406 DNA, ... 12407 bp Gateway binary vector pGWB406 QL-CON-00-014 163 bp View
AB294431.1 nt Gateway binary vector pGWB407 DNA, ... 10862 bp Gateway binary vector pGWB407 QL-CON-00-014 163 bp View
AB294432.1 nt Gateway binary vector pGWB408 DNA, ... 11703 bp Gateway binary vector pGWB408 QL-CON-00-014 163 bp View
AB294433.1 nt Gateway binary vector pGWB409 DNA, ... 11705 bp Gateway binary vector pGWB409 QL-CON-00-014 163 bp View
AB294434.1 nt Gateway binary vector pGWB410 DNA, ... 10868 bp Gateway binary vector pGWB410 QL-CON-00-014 163 bp View
AB294435.1 nt Gateway binary vector pGWB411 DNA, ... 11709 bp Gateway binary vector pGWB411 QL-CON-00-014 163 bp View
AB294436.1 nt Gateway binary vector pGWB412 DNA, ... 11711 bp Gateway binary vector pGWB412 QL-CON-00-014 163 bp View
AB294437.1 nt Gateway binary vector pGWB413 DNA, ... 10964 bp Gateway binary vector pGWB413 QL-CON-00-014 163 bp View
AB294438.1 nt Gateway binary vector pGWB414 DNA, ... 11805 bp Gateway binary vector pGWB414 QL-CON-00-014 163 bp View
AB294439.1 nt Gateway binary vector pGWB415 DNA, ... 11807 bp Gateway binary vector pGWB415 QL-CON-00-014 163 bp View
AB294440.1 nt Gateway binary vector pGWB416 DNA, ... 11000 bp Gateway binary vector pGWB416 QL-CON-00-014 163 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.