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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1572 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AX717085.1 emblrelpat Sequence 76 from Patent WO03020939. 10036 bp synthetic construct QL-CON-00-014 163 bp View
AX765918.1 emblrelpat Sequence 4 from Patent WO02097097. 5250 bp synthetic construct QL-CON-00-014 163 bp View
AX765954.1 emblrelpat Sequence 40 from Patent WO02097097. 5247 bp synthetic construct QL-CON-00-014 163 bp View
AX765955.1 emblrelpat Sequence 41 from Patent WO02097097. 5373 bp synthetic construct QL-CON-00-014 163 bp View
AX765956.1 emblrelpat Sequence 42 from Patent WO02097097. 6285 bp synthetic construct QL-CON-00-014 163 bp View
AX765957.1 emblrelpat Sequence 43 from Patent WO02097097. 6409 bp synthetic construct QL-CON-00-014 163 bp View
AX765962.1 emblrelpat Sequence 48 from Patent WO02097097. 5511 bp synthetic construct QL-CON-00-014 163 bp View
AX765963.1 emblrelpat Sequence 49 from Patent WO02097097. 5635 bp synthetic construct QL-CON-00-014 163 bp View
AX765964.1 emblrelpat Sequence 50 from Patent WO02097097. 6299 bp synthetic construct QL-CON-00-014 163 bp View
AX765965.1 emblrelpat Sequence 51 from Patent WO02097097. 6423 bp synthetic construct QL-CON-00-014 163 bp View
AX765966.1 emblrelpat Sequence 52 from Patent WO02097097. 5715 bp synthetic construct QL-CON-00-014 163 bp View
AX840045.1 emblrelpat Sequence 114 from Patent WO03078629. 8482 bp synthetic construct QL-CON-00-014 163 bp View
AX840634.1 emblrelpat Sequence 178 from Patent WO03077643. 8482 bp synthetic construct QL-CON-00-014 163 bp View
AX840635.1 emblrelpat Sequence 179 from Patent WO03077643. 10259 bp synthetic construct QL-CON-00-014 163 bp View
AX951598.1 emblrelpat Sequence 38 from Patent WO03093482. 12093 bp unidentified QL-CON-00-014 165 bp View
AX951599.1 emblrelpat Sequence 39 from Patent WO03093482. 12085 bp unidentified QL-CON-00-014 165 bp View
AX951600.1 emblrelpat Sequence 40 from Patent WO03093482. 12079 bp unidentified QL-CON-00-014 165 bp View
AX951601.1 emblrelpat Sequence 41 from Patent WO03093482. 13002 bp unidentified QL-CON-00-014 165 bp View
AX951602.1 emblrelpat Sequence 42 from Patent WO03093482. 13905 bp unidentified QL-CON-00-014 165 bp View
AX951603.1 emblrelpat Sequence 43 from Patent WO03093482. 15430 bp unidentified QL-CON-00-014 165 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.