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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1572 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AX093006.1 emblrelpat Sequence 11 from Patent WO0118192. 8654 bp synthetic construct QL-CON-00-014 164 bp View
AX093007.1 emblrelpat Sequence 12 from Patent WO0118192. 9143 bp synthetic construct QL-CON-00-014 163 bp View
AX093009.1 emblrelpat Sequence 14 from Patent WO0118192. 8654 bp synthetic construct QL-CON-00-014 164 bp View
AX093012.1 emblrelpat Sequence 17 from Patent WO0118192. 7503 bp synthetic construct QL-CON-00-014 164 bp View
AX093013.1 emblrelpat Sequence 18 from Patent WO0118192. 9390 bp synthetic construct QL-CON-00-014 164 bp View
AX093014.1 emblrelpat Sequence 19 from Patent WO0118192. 7503 bp synthetic construct QL-CON-00-014 164 bp View
AX093015.1 emblrelpat Sequence 20 from Patent WO0118192. 9390 bp synthetic construct QL-CON-00-014 164 bp View
AX093045.1 emblrelpat Sequence 50 from Patent WO0118192. 9688 bp synthetic construct QL-CON-00-014 163 bp View
AX093046.1 emblrelpat Sequence 51 from Patent WO0118192. 15208 bp synthetic construct QL-CON-00-014 163 bp View
AX093047.1 emblrelpat Sequence 52 from Patent WO0118192. 9285 bp synthetic construct QL-CON-00-014 164 bp View
AX093050.1 emblrelpat Sequence 55 from Patent WO0118192. 8289 bp synthetic construct QL-CON-00-014 164 bp View
AX093051.1 emblrelpat Sequence 56 from Patent WO0118192. 14108 bp synthetic construct QL-CON-00-014 163 bp View
AX093052.1 emblrelpat Sequence 57 from Patent WO0118192. 15077 bp synthetic construct QL-CON-00-014 163 bp View
AX275255.1 emblrelpat Sequence 4 from Patent WO0171014. 14446 bp synthetic construct QL-CON-00-014 143 bp View
AX350578.1 emblrelpat Sequence 13 from Patent WO0183529. 4465 bp synthetic construct QL-CON-00-014 149 bp View
AX350579.1 emblrelpat Sequence 14 from Patent WO0183529. 8074 bp synthetic construct QL-CON-00-014 149 bp View
AX391686.1 emblrelpat Sequence 1 from Patent WO0216622. 20174 bp synthetic construct QL-CON-00-014 163 bp View
AX391687.1 emblrelpat Sequence 2 from Patent WO0216622. 19705 bp synthetic construct QL-CON-00-014 163 bp View
AX481630.1 emblrelpat Sequence 20 from Patent WO02057465. 12093 bp unidentified QL-CON-00-014 165 bp View
AX481631.1 emblrelpat Sequence 21 from Patent WO02057465. 12085 bp unidentified QL-CON-00-014 165 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.