European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 206 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JC285243.1 emblrelpat Sequence 5 from Patent WO2011084632. 11978 bp synthetic construct QL-CON-00-011 102 bp View
JC285244.1 emblrelpat Sequence 6 from Patent WO2011084632. 15992 bp synthetic construct QL-CON-00-011 102 bp View
JX139720.1 nt Brassica napus transgenic strain T4... 551 bp Brassica napus QL-CON-00-011 111 bp View
JX139720.1 emblreltgn Brassica napus transgenic strain T4... 551 bp Brassica napus QL-CON-00-011 111 bp View
JX139722.1 emblreltgn Glycine max transgenic strain A2704... 493 bp Glycine max QL-CON-00-011 102 bp View
JX139722.1 nt Glycine max transgenic strain A2704... 493 bp Glycine max QL-CON-00-011 102 bp View
KH359792.1 emblrelpat Sequence 11 from patent US 9493782. 47747 bp unidentified QL-CON-00-011 102 bp View
KH359793.1 emblrelpat Sequence 12 from patent US 9493782. 48474 bp unidentified QL-CON-00-011 102 bp View
KH359794.1 emblrelpat Sequence 13 from patent US 9493782. 47505 bp unidentified QL-CON-00-011 102 bp View
KH359795.1 emblrelpat Sequence 14 from patent US 9493782. 48232 bp unidentified QL-CON-00-011 102 bp View
KH839007.1 emblrelpat Sequence 11 from patent US 9683242. 4076 bp unidentified QL-CON-00-011 102 bp View
LF938431.1 emblrelpat JP 2016187343-A/11: Herbicide toler... 4076 bp synthetic construct QL-CON-00-011 102 bp View
LG025923.1 emblrelpat KR 1020150006469-A/427: METHODS AND... 7390 bp synthetic construct QL-CON-00-011 102 bp View
LQ986677.1 emblrelpat Sequence 33 from Patent EP2573183. 11205 bp synthetic construct QL-CON-00-011 104 bp View
LQ986680.1 emblrelpat Sequence 36 from Patent EP2573183. 11205 bp synthetic construct QL-CON-00-011 104 bp View
LY667603.1 emblrelpat KR 1020190003994-A/5: NUCLEIC ACID ... 7059 bp synthetic construct QL-CON-00-011 102 bp View
MA005680.1 emblrelpat JP 2018007674-A/9: SOYBEAN EVENT SY... 7914 bp synthetic construct QL-CON-00-011 104 bp View
MA005680.1 emblrelpat JP 2018007674-A/9: SOYBEAN EVENT SY... 7914 bp synthetic construct QL-CON-00-011 104 bp View
MA005681.1 emblrelpat JP 2018007674-A/10: SOYBEAN EVENT S... 9206 bp synthetic construct QL-CON-00-011 104 bp View
MA005681.1 emblrelpat JP 2018007674-A/10: SOYBEAN EVENT S... 9206 bp synthetic construct QL-CON-00-011 104 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.