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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 206 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HK420663.1 emblrelpat Sequence 24 from patent US 8952223. 7390 bp unidentified QL-CON-00-011 102 bp View
HK420666.1 emblrelpat Sequence 27 from patent US 8952223. 2830 bp unidentified QL-CON-00-011 102 bp View
HK736163.1 emblrelpat Sequence 33 from patent US 9051545. 11205 bp unidentified QL-CON-00-011 104 bp View
HK736166.1 emblrelpat Sequence 36 from patent US 9051545. 11205 bp unidentified QL-CON-00-011 104 bp View
HK736180.1 emblrelpat Sequence 33 from patent US 9051546. 11205 bp unidentified QL-CON-00-011 104 bp View
HK736183.1 emblrelpat Sequence 36 from patent US 9051546. 11205 bp unidentified QL-CON-00-011 104 bp View
HK740422.1 emblrelpat Sequence 33 from patent US 9057050. 11205 bp unidentified QL-CON-00-011 104 bp View
HK740425.1 emblrelpat Sequence 36 from patent US 9057050. 11205 bp unidentified QL-CON-00-011 104 bp View
HK747734.1 emblrelpat Sequence 11 from patent US 9062324. 4076 bp unidentified QL-CON-00-011 102 bp View
HK757461.1 emblrelpat Sequence 33 from patent US 9074177. 11205 bp unidentified QL-CON-00-011 104 bp View
HK757464.1 emblrelpat Sequence 36 from patent US 9074177. 11205 bp unidentified QL-CON-00-011 104 bp View
HL831191.1 emblrelpat Sequence 51 from patent US 9347046. 11208 bp unidentified QL-CON-00-011 104 bp View
HL831192.1 emblrelpat Sequence 52 from patent US 9347046. 11208 bp unidentified QL-CON-00-011 104 bp View
HL915815.1 emblrelpat Sequence 33 from patent US 9388393. 11205 bp unidentified QL-CON-00-011 104 bp View
HL915818.1 emblrelpat Sequence 36 from patent US 9388393. 11205 bp unidentified QL-CON-00-011 104 bp View
HW057199.1 emblrelpat JP 2012245004-A/23: CORN EVENT DAS-... 11922 bp synthetic construct QL-CON-00-011 102 bp View
HW057200.1 emblrelpat JP 2012245004-A/24: CORN EVENT DAS-... 7390 bp synthetic construct QL-CON-00-011 102 bp View
HW057203.1 emblrelpat JP 2012245004-A/27: CORN EVENT DAS-... 2830 bp synthetic construct QL-CON-00-011 102 bp View
HW241800.1 emblrelpat JP 2013511294-A/11: Herbicide toler... 4076 bp synthetic construct QL-CON-00-011 102 bp View
HW254239.1 emblrelpat JP 2013514780-A/3: ENDPOINT TAQMAN ... 11361 bp synthetic construct QL-CON-00-011 102 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.