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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 206 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
GX006373.1 emblrelpat Sequence 23 from patent US 7696341. 11922 bp unidentified QL-CON-00-011 102 bp View
GX006374.1 emblrelpat Sequence 24 from patent US 7696341. 7390 bp unidentified QL-CON-00-011 102 bp View
GX006377.1 emblrelpat Sequence 27 from patent US 7696341. 2830 bp unidentified QL-CON-00-011 102 bp View
GX977640.1 emblrelpat Sequence 23 from patent US 7875429. 11922 bp unidentified QL-CON-00-011 102 bp View
GX977641.1 emblrelpat Sequence 24 from patent US 7875429. 7390 bp unidentified QL-CON-00-011 102 bp View
GX977644.1 emblrelpat Sequence 27 from patent US 7875429. 2830 bp unidentified QL-CON-00-011 102 bp View
GX977680.1 emblrelpat Sequence 23 from patent US 7875430. 11922 bp unidentified QL-CON-00-011 102 bp View
GX977681.1 emblrelpat Sequence 24 from patent US 7875430. 7390 bp unidentified QL-CON-00-011 102 bp View
GX977684.1 emblrelpat Sequence 27 from patent US 7875430. 2830 bp unidentified QL-CON-00-011 102 bp View
GY012608.1 emblrelpat Sequence 23 from patent US 7888023. 11922 bp unidentified QL-CON-00-011 102 bp View
GY012609.1 emblrelpat Sequence 24 from patent US 7888023. 7390 bp unidentified QL-CON-00-011 102 bp View
GY012612.1 emblrelpat Sequence 27 from patent US 7888023. 2830 bp unidentified QL-CON-00-011 102 bp View
GY016206.1 emblrelpat Sequence 23 from patent US 7888495. 11922 bp unidentified QL-CON-00-011 102 bp View
GY016207.1 emblrelpat Sequence 24 from patent US 7888495. 7390 bp unidentified QL-CON-00-011 102 bp View
GY016210.1 emblrelpat Sequence 27 from patent US 7888495. 2830 bp unidentified QL-CON-00-011 102 bp View
GY042301.1 emblrelpat Sequence 23 from patent US 7897342. 11922 bp unidentified QL-CON-00-011 102 bp View
GY042302.1 emblrelpat Sequence 24 from patent US 7897342. 7390 bp unidentified QL-CON-00-011 102 bp View
GY042305.1 emblrelpat Sequence 27 from patent US 7897342. 2830 bp unidentified QL-CON-00-011 102 bp View
GY184367.1 emblrelpat Sequence 23 from patent US 7932033. 11922 bp unidentified QL-CON-00-011 102 bp View
GY184368.1 emblrelpat Sequence 24 from patent US 7932033. 7390 bp unidentified QL-CON-00-011 102 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.