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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 206 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EA419707.1 emblrelpat Sequence 27 from patent US 7323556. 2830 bp unidentified QL-CON-00-011 102 bp View
FN550388.1 nt Zea mays transgenic partial 35S RNA... 102 bp Zea mays QL-CON-00-011 102 bp View
FN550388.1 emblreltgn Zea mays transgenic partial 35S RNA... 102 bp Zea mays QL-CON-00-011 102 bp View
GC560390.1 emblrelpat Sequence 24 from patent US 7417132. 11361 bp unidentified QL-CON-00-011 102 bp View
GC560391.1 emblrelpat Sequence 25 from patent US 7417132. 6186 bp unidentified QL-CON-00-011 102 bp View
GC560393.1 emblrelpat Sequence 27 from patent US 7417132. 3347 bp unidentified QL-CON-00-011 102 bp View
GC659846.1 emblrelpat Sequence 24 from patent US 7435807. 11361 bp unidentified QL-CON-00-011 102 bp View
GC659847.1 emblrelpat Sequence 25 from patent US 7435807. 6186 bp unidentified QL-CON-00-011 102 bp View
GC659849.1 emblrelpat Sequence 27 from patent US 7435807. 3347 bp unidentified QL-CON-00-011 102 bp View
GC673967.1 emblrelpat Sequence 24 from patent US 7449564. 11361 bp unidentified QL-CON-00-011 102 bp View
GC673968.1 emblrelpat Sequence 25 from patent US 7449564. 6186 bp unidentified QL-CON-00-011 102 bp View
GC673970.1 emblrelpat Sequence 27 from patent US 7449564. 3347 bp unidentified QL-CON-00-011 102 bp View
GP324381.1 emblrelpat Sequence 24 from patent US 7514544. 11361 bp unidentified QL-CON-00-011 102 bp View
GP324382.1 emblrelpat Sequence 25 from patent US 7514544. 6186 bp unidentified QL-CON-00-011 102 bp View
GP324384.1 emblrelpat Sequence 27 from patent US 7514544. 3347 bp unidentified QL-CON-00-011 102 bp View
GQ497217.1 emblreltgn Glycine max transgenic GMO cassette... 3210 bp Glycine max QL-CON-00-011 102 bp View
GQ497217.1 nt Glycine max transgenic GMO cassette... 3210 bp Glycine max QL-CON-00-011 102 bp View
GX003488.1 emblrelpat Sequence 23 from patent US 7695914. 11922 bp unidentified QL-CON-00-011 102 bp View
GX003489.1 emblrelpat Sequence 24 from patent US 7695914. 7390 bp unidentified QL-CON-00-011 102 bp View
GX003492.1 emblrelpat Sequence 27 from patent US 7695914. 2830 bp unidentified QL-CON-00-011 102 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.