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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 236 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
LP059363.1 emblrelpat Sequence 31 from Patent EP2846621. 12218 bp synthetic construct QL-CON-00-008 88 bp View
LP059364.1 emblrelpat Sequence 32 from Patent EP2846621. 12797 bp synthetic construct QL-CON-00-008 88 bp View
LP059365.1 emblrelpat Sequence 33 from Patent EP2846621. 11906 bp synthetic construct QL-CON-00-008 88 bp View
LP755605.1 emblrelpat Sequence 1 from Patent EP3290516. 8590 bp synthetic construct QL-CON-00-008 88 bp View
LP755606.1 emblrelpat Sequence 2 from Patent EP3290516. 7794 bp synthetic construct QL-CON-00-008 88 bp View
LY667603.1 emblrelpat KR 1020190003994-A/5: NUCLEIC ACID ... 7059 bp synthetic construct QL-CON-00-008 88 bp View
MI040522.1 emblrelpat Sequence 5 from patent US 9738903. 4427 bp unidentified QL-CON-00-008 88 bp View
MI040523.1 emblrelpat Sequence 6 from patent US 9738903. 6126 bp unidentified QL-CON-00-008 88 bp View
MI382424.1 emblrelpat Sequence 10033 from patent US 9862959. 14437 bp unidentified QL-CON-00-008 88 bp View
MI459486.1 emblrelpat Sequence 1 from patent US 9913487. 8590 bp unidentified QL-CON-00-008 88 bp View
MI459487.1 emblrelpat Sequence 2 from patent US 9913487. 7794 bp unidentified QL-CON-00-008 88 bp View
MI510447.1 emblrelpat Sequence 9 from patent US 9944945. 6466 bp unidentified QL-CON-00-008 88 bp View
MI664149.1 emblrelpat Sequence 1 from patent US 9976139. 8590 bp unidentified QL-CON-00-008 88 bp View
MI664150.1 emblrelpat Sequence 2 from patent US 9976139. 7794 bp unidentified QL-CON-00-008 88 bp View
MM072716.1 emblrelpat Sequence 19940 from patent US 10093943. 12554 bp unidentified QL-CON-00-008 88 bp View
MM914948.1 emblrelpat Sequence 6024 from patent US 10301642. 11722 bp unidentified QL-CON-00-008 88 bp View
MN020371.1 emblreltgn Triticum aestivum transgenic MON712... 7729 bp Triticum aestivum QL-CON-00-008 88 bp View
MN020371.1 emblreltgn Triticum aestivum transgenic MON712... 7729 bp Triticum aestivum QL-CON-00-008 88 bp View
MN020371.1 nt Triticum aestivum transgenic MON712... 7729 bp Triticum aestivum QL-CON-00-008 88 bp View
MN020371.1 nt Triticum aestivum transgenic MON712... 7729 bp Triticum aestivum QL-CON-00-008 88 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.