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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 236 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KH175044.1 emblrelpat Sequence 31 from patent US 9441240. 12218 bp unidentified QL-CON-00-008 88 bp View
KH175045.1 emblrelpat Sequence 32 from patent US 9441240. 12797 bp unidentified QL-CON-00-008 88 bp View
KH175046.1 emblrelpat Sequence 33 from patent US 9441240. 11906 bp unidentified QL-CON-00-008 88 bp View
KH526904.1 emblrelpat Sequence 5 from patent US 9556492. 7450 bp unidentified QL-CON-00-008 88 bp View
KH559680.1 emblrelpat Sequence 5 from patent US 9572311. 7251 bp unidentified QL-CON-00-008 88 bp View
KH559681.1 emblrelpat Sequence 6 from patent US 9572311. 13224 bp unidentified QL-CON-00-008 88 bp View
KH559682.1 emblrelpat Sequence 7 from patent US 9572311. 6583 bp unidentified QL-CON-00-008 88 bp View
KX640115.1 emblreltgn Zea mays transgenic cultivar 631 RR... 7584 bp Zea mays QL-CON-00-008 88 bp View
KX640115.1 nt Zea mays transgenic cultivar 631 RR... 7584 bp Zea mays QL-CON-00-008 88 bp View
KX640115.1 emblreltgn Zea mays transgenic cultivar 631 RR... 7584 bp Zea mays QL-CON-00-008 88 bp View
KX640115.1 nt Zea mays transgenic cultivar 631 RR... 7584 bp Zea mays QL-CON-00-008 88 bp View
LP000135.1 emblrelpat Sequence 9 from Patent EP2975129. 6466 bp synthetic construct QL-CON-00-008 88 bp View
LP059333.1 emblrelpat Sequence 1 from Patent EP2846621. 12248 bp synthetic construct QL-CON-00-008 88 bp View
LP059336.1 emblrelpat Sequence 4 from Patent EP2846621. 11248 bp synthetic construct QL-CON-00-008 88 bp View
LP059348.1 emblrelpat Sequence 16 from Patent EP2846621. 4370 bp synthetic construct QL-CON-00-008 88 bp View
LP059358.1 emblrelpat Sequence 26 from Patent EP2846621. 11743 bp synthetic construct QL-CON-00-008 88 bp View
LP059359.1 emblrelpat Sequence 27 from Patent EP2846621. 12322 bp synthetic construct QL-CON-00-008 88 bp View
LP059360.1 emblrelpat Sequence 28 from Patent EP2846621. 11787 bp synthetic construct QL-CON-00-008 88 bp View
LP059361.1 emblrelpat Sequence 29 from Patent EP2846621. 12322 bp synthetic construct QL-CON-00-008 88 bp View
LP059362.1 emblrelpat Sequence 30 from Patent EP2846621. 12797 bp synthetic construct QL-CON-00-008 88 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.