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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 236 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HZ345425.1 emblrelpat JP 2015519051-A/31: CORN EVENT MON ... 11906 bp synthetic construct QL-CON-00-008 88 bp View
JA040005.1 emblrelpat Sequence 9 from Patent EP2275561. 6466 bp synthetic construct QL-CON-00-008 88 bp View
JA458263.1 emblrelpat Sequence 1 from Patent EP2365072. 8590 bp synthetic construct QL-CON-00-008 88 bp View
JA458264.1 emblrelpat Sequence 2 from Patent EP2365072. 7794 bp synthetic construct QL-CON-00-008 88 bp View
JA486739.1 emblrelpat Sequence 5 from Patent EP2328400. 7251 bp synthetic construct QL-CON-00-008 88 bp View
JA486740.1 emblrelpat Sequence 6 from Patent EP2328400. 13224 bp synthetic construct QL-CON-00-008 88 bp View
JA486741.1 emblrelpat Sequence 7 from Patent EP2328400. 6583 bp synthetic construct QL-CON-00-008 88 bp View
JA687153.1 emblrelpat Sequence 5 from Patent WO2011153186. 4427 bp synthetic construct QL-CON-00-008 88 bp View
JA687154.1 emblrelpat Sequence 6 from Patent WO2011153186. 6126 bp synthetic construct QL-CON-00-008 88 bp View
JA868500.1 emblrelpat Sequence 2065 from Patent EP2304030. 11722 bp synthetic construct QL-CON-00-008 88 bp View
JN400383.1 nt Expression vector pMON93914, comple... 11397 bp Expression vector pMON93914 QL-CON-00-008 88 bp View
JN400388.1 nt Expression vector pMON99036, comple... 9808 bp Expression vector pMON99036 QL-CON-00-008 88 bp View
KH175016.1 emblrelpat Sequence 1 from patent US 9441240. 12248 bp unidentified QL-CON-00-008 88 bp View
KH175019.1 emblrelpat Sequence 4 from patent US 9441240. 11248 bp unidentified QL-CON-00-008 88 bp View
KH175030.1 emblrelpat Sequence 16 from patent US 9441240. 4370 bp unidentified QL-CON-00-008 88 bp View
KH175039.1 emblrelpat Sequence 26 from patent US 9441240. 11743 bp unidentified QL-CON-00-008 88 bp View
KH175040.1 emblrelpat Sequence 27 from patent US 9441240. 12322 bp unidentified QL-CON-00-008 88 bp View
KH175041.1 emblrelpat Sequence 28 from patent US 9441240. 11787 bp unidentified QL-CON-00-008 88 bp View
KH175042.1 emblrelpat Sequence 29 from patent US 9441240. 12322 bp unidentified QL-CON-00-008 88 bp View
KH175043.1 emblrelpat Sequence 30 from patent US 9441240. 12797 bp unidentified QL-CON-00-008 88 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.