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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 236 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HV699110.1 emblrelpat JP 2012503989-A/5: SOYBEAN TRANSGEN... 7251 bp synthetic construct QL-CON-00-008 88 bp View
HV699111.1 emblrelpat JP 2012503989-A/6: SOYBEAN TRANSGEN... 13224 bp synthetic construct QL-CON-00-008 88 bp View
HV699112.1 emblrelpat JP 2012503989-A/7: SOYBEAN TRANSGEN... 6583 bp synthetic construct QL-CON-00-008 88 bp View
HV702026.1 emblrelpat JP 2012070734-A/5: Corn Plant MON88... 7450 bp synthetic construct QL-CON-00-008 88 bp View
HW600294.1 emblrelpat JP 2013532963-A/5: TRANSGENIC BRASS... 4427 bp synthetic construct QL-CON-00-008 88 bp View
HW600295.1 emblrelpat JP 2013532963-A/6: TRANSGENIC BRASS... 6126 bp synthetic construct QL-CON-00-008 88 bp View
HW805122.1 emblrelpat JP 2015006192-A/9: SOYBEAN EVENT MO... 6466 bp synthetic construct QL-CON-00-008 88 bp View
HZ185370.1 emblrelpat JP 2015144602-A/5: SOYBEAN TRANSGEN... 7251 bp synthetic construct QL-CON-00-008 88 bp View
HZ185371.1 emblrelpat JP 2015144602-A/6: SOYBEAN TRANSGEN... 13224 bp synthetic construct QL-CON-00-008 88 bp View
HZ185372.1 emblrelpat JP 2015144602-A/7: SOYBEAN TRANSGEN... 6583 bp synthetic construct QL-CON-00-008 88 bp View
HZ345395.1 emblrelpat JP 2015519051-A/1: CORN EVENT MON 8... 12248 bp synthetic construct QL-CON-00-008 88 bp View
HZ345398.1 emblrelpat JP 2015519051-A/4: CORN EVENT MON 8... 11248 bp synthetic construct QL-CON-00-008 88 bp View
HZ345409.1 emblrelpat JP 2015519051-A/15: CORN EVENT MON ... 4370 bp synthetic construct QL-CON-00-008 88 bp View
HZ345418.1 emblrelpat JP 2015519051-A/24: CORN EVENT MON ... 11743 bp synthetic construct QL-CON-00-008 88 bp View
HZ345419.1 emblrelpat JP 2015519051-A/25: CORN EVENT MON ... 12322 bp synthetic construct QL-CON-00-008 88 bp View
HZ345420.1 emblrelpat JP 2015519051-A/26: CORN EVENT MON ... 11787 bp synthetic construct QL-CON-00-008 88 bp View
HZ345421.1 emblrelpat JP 2015519051-A/27: CORN EVENT MON ... 12322 bp synthetic construct QL-CON-00-008 88 bp View
HZ345422.1 emblrelpat JP 2015519051-A/28: CORN EVENT MON ... 12797 bp synthetic construct QL-CON-00-008 88 bp View
HZ345423.1 emblrelpat JP 2015519051-A/29: CORN EVENT MON ... 12218 bp synthetic construct QL-CON-00-008 88 bp View
HZ345424.1 emblrelpat JP 2015519051-A/30: CORN EVENT MON ... 12797 bp synthetic construct QL-CON-00-008 88 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.