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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 236 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HK504186.1 emblrelpat Sequence 218 from patent US 8981188. 13888 bp unidentified QL-CON-00-008 88 bp View
HK504187.1 emblrelpat Sequence 219 from patent US 8981188. 13888 bp unidentified QL-CON-00-008 88 bp View
HK554733.1 emblrelpat Sequence 1 from patent US 9006414. 8590 bp unidentified QL-CON-00-008 88 bp View
HK554734.1 emblrelpat Sequence 2 from patent US 9006414. 7794 bp unidentified QL-CON-00-008 88 bp View
HK658379.1 emblrelpat Sequence 9 from patent US 9017947. 6466 bp unidentified QL-CON-00-008 88 bp View
HK727770.1 emblrelpat Sequence 2065 from patent US 9040774. 11722 bp unidentified QL-CON-00-008 88 bp View
HL755873.1 emblrelpat Sequence 27374 from patent US 9290773. 12554 bp unidentified QL-CON-00-008 88 bp View
HL784290.1 emblrelpat Sequence 19940 from patent US 9315822. 12554 bp unidentified QL-CON-00-008 88 bp View
HL867351.1 emblrelpat Sequence 1 from patent US 9365863. 12248 bp unidentified QL-CON-00-008 88 bp View
HL867354.1 emblrelpat Sequence 4 from patent US 9365863. 11248 bp unidentified QL-CON-00-008 88 bp View
HL867365.1 emblrelpat Sequence 16 from patent US 9365863. 4370 bp unidentified QL-CON-00-008 88 bp View
HL867374.1 emblrelpat Sequence 26 from patent US 9365863. 11743 bp unidentified QL-CON-00-008 88 bp View
HL867375.1 emblrelpat Sequence 27 from patent US 9365863. 12322 bp unidentified QL-CON-00-008 88 bp View
HL867376.1 emblrelpat Sequence 28 from patent US 9365863. 11787 bp unidentified QL-CON-00-008 88 bp View
HL867377.1 emblrelpat Sequence 29 from patent US 9365863. 12322 bp unidentified QL-CON-00-008 88 bp View
HL867378.1 emblrelpat Sequence 30 from patent US 9365863. 12797 bp unidentified QL-CON-00-008 88 bp View
HL867379.1 emblrelpat Sequence 31 from patent US 9365863. 12218 bp unidentified QL-CON-00-008 88 bp View
HL867380.1 emblrelpat Sequence 32 from patent US 9365863. 12797 bp unidentified QL-CON-00-008 88 bp View
HL867381.1 emblrelpat Sequence 33 from patent US 9365863. 11906 bp unidentified QL-CON-00-008 88 bp View
HL991684.1 emblrelpat Sequence 36 from patent US 9428764. 1596 bp unidentified QL-CON-00-008 88 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.