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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 236 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
DD417675.1 emblrelpat Glyphosate Tolerant Sugar Beet. 3706 bp synthetic construct QL-CON-00-008 88 bp View
DI227398.1 emblrelpat KR 1020110063817-A/5: SOYBEAN TRANS... 7251 bp artificial sequences QL-CON-00-008 88 bp View
DI227399.1 emblrelpat KR 1020110063817-A/6: SOYBEAN TRANS... 13224 bp artificial sequences QL-CON-00-008 88 bp View
DI227400.1 emblrelpat KR 1020110063817-A/7: SOYBEAN TRANS... 6583 bp artificial sequences QL-CON-00-008 88 bp View
DI354020.1 emblrelpat KR 1020130086599-A/5: TRANSGENIC BR... 4427 bp synthetic construct QL-CON-00-008 88 bp View
DI354021.1 emblrelpat KR 1020130086599-A/6: TRANSGENIC BR... 6126 bp synthetic construct QL-CON-00-008 88 bp View
DJ058152.1 emblrelpat Corn Plant MON88017 and Composition... 7450 bp synthetic construct QL-CON-00-008 88 bp View
DM055667.1 emblrelpat RECOMBINANT DNA FOR GENE SUPPRESSION. 8590 bp unidentified QL-CON-00-008 88 bp View
DM055668.1 emblrelpat RECOMBINANT DNA FOR GENE SUPPRESSION. 7794 bp unidentified QL-CON-00-008 88 bp View
DM137625.1 emblrelpat SOYBEAN EVENT MON89788 AND METHODS ... 6466 bp synthetic construct QL-CON-00-008 88 bp View
EA442323.1 emblrelpat Sequence 5 from patent US 7335816. 3778 bp unidentified QL-CON-00-008 88 bp View
EA442324.1 emblrelpat Sequence 6 from patent US 7335816. 3706 bp unidentified QL-CON-00-008 88 bp View
FB572992.1 emblrelpat Sequence 9 from Patent WO2006130436. 6466 bp synthetic construct QL-CON-00-008 88 bp View
FN550387.1 emblreltgn Zea mays transgenic partial ctp2 ge... 88 bp Zea mays QL-CON-00-008 88 bp View
FN550387.1 nt Zea mays transgenic partial ctp2 ge... 88 bp Zea mays QL-CON-00-008 88 bp View
FW310534.1 emblrelpat PRODUCTION OF HIGH TRYPTOPHAN MAIZE... 13596 bp synthetic construct QL-CON-00-008 88 bp View
FW310535.1 emblrelpat PRODUCTION OF HIGH TRYPTOPHAN MAIZE... 13559 bp synthetic construct QL-CON-00-008 88 bp View
FW310536.1 emblrelpat PRODUCTION OF HIGH TRYPTOPHAN MAIZE... 13905 bp synthetic construct QL-CON-00-008 88 bp View
FW310537.1 emblrelpat PRODUCTION OF HIGH TRYPTOPHAN MAIZE... 13905 bp synthetic construct QL-CON-00-008 88 bp View
FW310538.1 emblrelpat PRODUCTION OF HIGH TRYPTOPHAN MAIZE... 13905 bp synthetic construct QL-CON-00-008 88 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.