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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 213 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KH839007.1 emblrelpat Sequence 11 from patent US 9683242. 4076 bp unidentified QL-CON-00-005 210 bp View
LF938431.1 emblrelpat JP 2016187343-A/11: Herbicide toler... 4076 bp synthetic construct QL-CON-00-005 210 bp View
LG025702.1 emblrelpat KR 1020150006469-A/185: METHODS AND... 6661 bp synthetic construct QL-CON-00-005 208 bp View
LG025822.1 emblrelpat KR 1020150006469-A/326: METHODS AND... 6661 bp synthetic construct QL-CON-00-005 208 bp View
LG025923.1 emblrelpat KR 1020150006469-A/427: METHODS AND... 7390 bp synthetic construct QL-CON-00-005 210 bp View
LG167144.1 emblrelpat KR 1020150140723-A/88: METHODS AND ... 6661 bp synthetic construct QL-CON-00-005 208 bp View
LG167263.1 emblrelpat KR 1020150140723-A/289: METHODS AND... 6661 bp synthetic construct QL-CON-00-005 208 bp View
LG167270.1 emblrelpat KR 1020150140723-A/296: METHODS AND... 3893 bp synthetic construct QL-CON-00-005 208 bp View
LG167277.1 emblrelpat KR 1020150140723-A/303: METHODS AND... 11938 bp synthetic construct QL-CON-00-005 208 bp View
LG167288.1 emblrelpat KR 1020150140723-A/314: METHODS AND... 3336 bp synthetic construct QL-CON-00-005 208 bp View
LQ109395.1 emblrelpat Sequence 88 from Patent EP2981166. 6661 bp synthetic construct QL-CON-00-005 208 bp View
LQ109596.1 emblrelpat Sequence 289 from Patent EP2981166. 6661 bp synthetic construct QL-CON-00-005 208 bp View
LQ109603.1 emblrelpat Sequence 296 from Patent EP2981166. 3893 bp synthetic construct QL-CON-00-005 208 bp View
LQ109610.1 emblrelpat Sequence 303 from Patent EP2981166. 11938 bp synthetic construct QL-CON-00-005 208 bp View
LQ109621.1 emblrelpat Sequence 314 from Patent EP2981166. 3336 bp synthetic construct QL-CON-00-005 208 bp View
LX295282.1 emblrelpat JP 2016514480-A/80: METHODS AND COM... 6661 bp synthetic construct QL-CON-00-005 208 bp View
LX295401.1 emblrelpat JP 2016514480-A/199: METHODS AND CO... 6661 bp synthetic construct QL-CON-00-005 208 bp View
LX295408.1 emblrelpat JP 2016514480-A/206: METHODS AND CO... 3893 bp synthetic construct QL-CON-00-005 208 bp View
LX295415.1 emblrelpat JP 2016514480-A/213: METHODS AND CO... 11938 bp synthetic construct QL-CON-00-005 208 bp View
LX295426.1 emblrelpat JP 2016514480-A/224: METHODS AND CO... 3336 bp synthetic construct QL-CON-00-005 208 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.