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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 213 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HW479166.1 emblrelpat JP 2013055956-A/24: Corn Event TC15... 11361 bp synthetic construct QL-CON-00-005 210 bp View
HW479167.1 emblrelpat JP 2013055956-A/25: Corn Event TC15... 6186 bp synthetic construct QL-CON-00-005 209 bp View
HW479169.1 emblrelpat JP 2013055956-A/27: Corn Event TC15... 3347 bp synthetic construct QL-CON-00-005 210 bp View
HZ183021.1 emblrelpat JP 2015516162-A/164: METHODS AND CO... 6661 bp synthetic construct QL-CON-00-005 208 bp View
HZ183141.1 emblrelpat JP 2015516162-A/284: METHODS AND CO... 6661 bp synthetic construct QL-CON-00-005 208 bp View
HZ183242.1 emblrelpat JP 2015516162-A/385: METHODS AND CO... 7390 bp synthetic construct QL-CON-00-005 210 bp View
JA781826.1 emblrelpat Sequence 3 from Patent EP2513326. 11361 bp synthetic construct QL-CON-00-005 210 bp View
JB255993.1 emblrelpat Sequence 11 from Patent EP2503873. 4076 bp synthetic construct QL-CON-00-005 210 bp View
JC111158.1 emblrelpat Sequence 11 from Patent WO2013173535. 47747 bp synthetic construct QL-CON-00-005 209 bp View
JC111159.1 emblrelpat Sequence 12 from Patent WO2013173535. 48474 bp synthetic construct QL-CON-00-005 209 bp View
JC111160.1 emblrelpat Sequence 13 from Patent WO2013173535. 47505 bp synthetic construct QL-CON-00-005 209 bp View
JC111161.1 emblrelpat Sequence 14 from Patent WO2013173535. 48232 bp synthetic construct QL-CON-00-005 209 bp View
JC170511.1 emblrelpat Sequence 5 from Patent WO2013149018. 11978 bp synthetic construct QL-CON-00-005 210 bp View
JC170512.1 emblrelpat Sequence 6 from Patent WO2013149018. 16752 bp synthetic construct QL-CON-00-005 210 bp View
JC285243.1 emblrelpat Sequence 5 from Patent WO2011084632. 11978 bp synthetic construct QL-CON-00-005 210 bp View
JC285244.1 emblrelpat Sequence 6 from Patent WO2011084632. 15992 bp synthetic construct QL-CON-00-005 210 bp View
KH359792.1 emblrelpat Sequence 11 from patent US 9493782. 47747 bp unidentified QL-CON-00-005 209 bp View
KH359793.1 emblrelpat Sequence 12 from patent US 9493782. 48474 bp unidentified QL-CON-00-005 209 bp View
KH359794.1 emblrelpat Sequence 13 from patent US 9493782. 47505 bp unidentified QL-CON-00-005 209 bp View
KH359795.1 emblrelpat Sequence 14 from patent US 9493782. 48232 bp unidentified QL-CON-00-005 209 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.