European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 213 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
NRN_CQ945863 nrnl1 Sequence 25 from Patent WO200409944... 6186 bp unidentified QL-CON-00-005 209 bp View
NRN_CQ945865 nrnl1 Sequence 27 from Patent WO200409944... 3347 bp unidentified QL-CON-00-005 210 bp View
NRN_CS007935 nrnl1 Sequence 2 from Patent EP1502955. ... 11195 bp unidentified QL-CON-00-005 209 bp View
NRN_CS007936 nrnl1 Sequence 3 from Patent EP1502955. ... 12415 bp unidentified QL-CON-00-005 209 bp View
NRN_CS566035 nrnl1 Sequence 22 from Patent WO200603937... 2987 bp unidentified QL-CON-00-005 210 bp View
NRN_CS566036 nrnl1 Sequence 23 from Patent WO200603937... 11922 bp unidentified QL-CON-00-005 210 bp View
NRN_CS566037 nrnl1 Sequence 24 from Patent WO200603937... 7390 bp unidentified QL-CON-00-005 210 bp View
NRN_CS566040 nrnl1 Sequence 27 from Patent WO200603937... 2830 bp unidentified QL-CON-00-005 210 bp View
OF002214.1 emblrelpat KR 1020200047746-A/88: METHODS AND ... 6661 bp synthetic construct QL-CON-00-005 208 bp View
OF002333.1 emblrelpat KR 1020200047746-A/289: METHODS AND... 6661 bp synthetic construct QL-CON-00-005 208 bp View
OF002340.1 emblrelpat KR 1020200047746-A/296: METHODS AND... 3893 bp synthetic construct QL-CON-00-005 208 bp View
OF002347.1 emblrelpat KR 1020200047746-A/303: METHODS AND... 11938 bp synthetic construct QL-CON-00-005 208 bp View
OF002358.1 emblrelpat KR 1020200047746-A/314: METHODS AND... 3336 bp synthetic construct QL-CON-00-005 208 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.