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GMOMETHODS:
EU Database of Reference Methods for GMO Analysis
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Entry information
Entry name QL-EVE-DC-004;       See in JRC GMO-Matrix       See in JRC GMO-Amplicons
GMO Unique Identifier IFD-26407-2
Description
Description Qualitative PCR method for detection of carnation event 26407 (verified by the EURL GMFF in the context of Commission Implementing Decision (EU) 2015/694).
Keywords event_specific, EU-RL_GMFF_in-house_verified.
From Dianthus caryophyllus (carnation) - event 26407 (IFD-26407-2)
References
1 Savini C., Pinski G., Mazzara M., Kreysa J.; "Report on the Single-laboratory Validation of a PCR-based Detection Method for Identification of FlorigeneTM 26407 GM Carnation - Validation Report and Validated Method" Online Publication (2013)
DOI 10.2788/34771
Reference Position 1-491
2 "PCR reactions set up and amplification conditions" Online Publication (2016)
PCR QL-EVE-DC-004.pdf
Reference Position 1-491
Cross-references
GMOMETHODS QL-TAX-DC-001;
Features
Key Location Qualifier Value
STS 1..491 standard_namePCR 491 bp amplicon
noteEvent-specific PCR
target3' integration border region (IBR) between the insert of carnation event 26407 and the carnation host genome
primer_b 1..23 standard_namePrimer forward: RB Forward
noteATTTCCACCTTCACCTACGATGG
targetinsert
primer_b complement(471..491) standard_namePrimer reverse: IFD-26407-2 Reverse
noteCACGGGTACAAATTGGATGAG
target3'-host genome
Sequence information
Length: 491 BP, A Count: 157, C Count: 84, T Count: 164, G Count: 86
atttccacct tcacctacga tggnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn        60
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       120
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       180
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       240
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       300
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       360
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       420
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ctcatccaat       480
ttgtacccgt g                                                            491